Rroxscaffold_4G00300230

UTP--glucose-1-phosphate uridylyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
20414630 .. 20415426
797 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00300230.1

Sequence Viewer

Length: 222 bp
ATGGAGGTTTGGGTAAAAATATGGGATTCGGTAATCAAGTTCAATGGAGGTTTGGGTACAAATATTGGATTCGGTGGCCCCAAGTATGAATCTCTCAATTCTAAGTATCACTACGGTGTTCCTTTGGTCCTTGTGAACACGGATAGTACACATGAAAATATGGTGAAGGTGAGAAGTTTAATGCATGGTGTTGACACGGAAGCAGCAAGTACAGAAGCTTAG

Protein Analysis

73

Amino Acids

8.03

Weight (kDa)

5.81

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 58, 148, 211
AgsI TTSAA 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 77, 127
AsuHPI GGTGA 2 cut(s) 175, 181
AvaII GGWCC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 77, 127
BmiI GGNNCC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 78
BsnI GGCC 1 cut(s) 78
BspANI GGCC 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 102, 219
BstV1I GCAGC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 77, 127
Csp6I GTAC 3 cut(s) 57, 147, 210
CviAII CATG 2 cut(s) 152, 185
CviJI RGCY 2 cut(s) 78, 218
CviKI_1 RGCY 2 cut(s) 78, 218
CviQI GTAC 3 cut(s) 57, 147, 210
DdeI CTNAG 2 cut(s) 102, 219
Eco47I GGWCC 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 186
FaeI CATG 2 cut(s) 155, 188
FaiI YATR 5 cut(s) 22, 87, 153, 161, 186
FatI CATG 2 cut(s) 151, 184
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 2 cut(s) 155, 188
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 3 cut(s) 26, 69, 89
HphI GGTGA 2 cut(s) 175, 181
Hpy166II GTNNAC 3 cut(s) 136, 149, 193
Hpy8I GTNNAC 3 cut(s) 136, 149, 193
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 102, 219
Hsp92II CATG 2 cut(s) 155, 188
Lsp1109I GCAGC 1 cut(s) 215
MluCI AATT 1 cut(s) 97
MnlI CCTC 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 186
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 114
NlaIII CATG 2 cut(s) 155, 188
NlaIV GGNNCC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 114
PfeI GAWTC 3 cut(s) 26, 69, 89
PkrI GCNGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 77, 127
RsaI GTAC 3 cut(s) 58, 148, 211
RsaNI GTAC 3 cut(s) 57, 147, 210
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 77, 127
SetI ASST 4 cut(s) 9, 52, 171, 220
SgeI CNNG 7 cut(s) 49, 94, 143, 151, 164, 197, 208
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 97
SspI AATATT 1 cut(s) 64
TaaI ACNGT 1 cut(s) 116
TasI AATT 1 cut(s) 97
TatI WGTACW 2 cut(s) 146, 209
TfiI GAWTC 3 cut(s) 26, 69, 89
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 102, 168
TspGWI ACGGA 2 cut(s) 155, 212
VpaK11BI GGWCC 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.