Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Reverse (-)

89345218 .. 89346979

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG563500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAACACCAAACACAGCAACCTGCAAGGCTACAACCAGCAATCCGTCTCCGCCAGTCCGCCTCTGCAGTCTCCGAGCTCCTCCTCCAGGCTCTAGTTTGTAACTTTTTAAGATTCATGATTATATGTCTTTCTACACTTGTCGGTGAGTCACTTCCTGTGAACAAAGGCCCTGGTGACATTCTTGATGCTTGGAATTGCAGTGCTAGTGGGATTCCAGGAGAGAATATGGGTGTTATTATACAATTCCTCTTGATCATGGTCAATCTGGGAGGACAGATAGCCTCTTGTATATCCTTCATGGACTCTGCTAACCTATGCTTCGATGACTATTGGTTTTGTAAGTCTCCTTTTCAGCAGCTCATCTCTTATTTGGGATTATACGGATCTGGGTTTGAGTTTGAAGGTCTTGTTTGGGCCATTAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.77

Weight (kDa)

4.72

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AciI	CCGC	2 cut(s)	52, 60
AclWI	GGATC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	3 cut(s)	87, 172, 217
AluBI	AGCT	2 cut(s)	79, 361
AluI	AGCT	2 cut(s)	79, 361
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	3 cut(s)	53, 76, 351
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	169, 417
ApeKI	GCWGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	170, 417
AsuHPI	GGTGA	2 cut(s)	158, 188
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	370
BciT130I	CCWGG	3 cut(s)	89, 174, 219
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	3 cut(s)	53, 76, 351
BfaI	CTAG	2 cut(s)	95, 207
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	3 cut(s)	89, 174, 219
BmgT120I	GGNCC	2 cut(s)	170, 417
BmrFI	CCNGG	3 cut(s)	89, 174, 219
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	3 cut(s)	89, 174, 219
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	2 cut(s)	71, 74
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	2 cut(s)	171, 419
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	53, 76, 351
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	171, 419
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	255, 386
BspACI	CCGC	2 cut(s)	52, 60
BspANI	GGCC	2 cut(s)	171, 419
BspHI	TCATGA	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	255, 386
Bst2UI	CCWGG	3 cut(s)	89, 174, 219
BstDEI	CTNAG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	258, 389
BstMAI	GTCTC	3 cut(s)	53, 76, 351
BstMBI	GATC	2 cut(s)	255, 386
BstNI	CCWGG	3 cut(s)	89, 174, 219
BstSCI	CCNGG	3 cut(s)	87, 172, 217
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	171, 419
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	31
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	170, 417
CviAII	CATG	3 cut(s)	118, 259, 301
CviJI	RGCY	7 cut(s)	31, 79, 92, 171, 284, 361, 419
CviKI_1	RGCY	7 cut(s)	31, 79, 92, 171, 284, 361, 419
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	2 cut(s)	257, 388
DpnII	GATC	2 cut(s)	255, 386
EciI	GGCGGA	2 cut(s)	41, 49
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	87, 172, 217
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	3 cut(s)	121, 262, 304
FatI	CATG	3 cut(s)	117, 258, 300
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	2 cut(s)	95, 207
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	171, 419
Hin1II	CATG	3 cut(s)	121, 262, 304
HinfI	GANTC	4 cut(s)	114, 149, 214, 305
HphI	GGTGA	2 cut(s)	158, 188
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	118, 185, 253
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	307, 398
HpyCH4V	TGCA	3 cut(s)	26, 68, 201
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	121, 262, 304
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 386
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	95, 207
MaeIII	GTNAC	3 cut(s)	101, 150, 176
MalI	GATC	2 cut(s)	257, 388
MboI	GATC	2 cut(s)	255, 386
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	196, 245
MlyI	GAGTC	2 cut(s)	158, 299
MnlI	CCTC	6 cut(s)	73, 92, 95, 260, 266, 295
MseI	TTAA	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	89, 174, 219
MvaI	CCWGG	3 cut(s)	89, 174, 219
NdeII	GATC	2 cut(s)	255, 386
NlaIII	CATG	3 cut(s)	121, 262, 304
NmuCI	GTSAC	2 cut(s)	150, 176
PagI	TCATGA	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	114, 214
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	2 cut(s)	157, 299
PpsI	GAGTC	2 cut(s)	157, 299
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	87, 172, 217
PspGI	CCWGG	3 cut(s)	87, 172, 217
PspPI	GGNCC	2 cut(s)	170, 417
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	255, 386
Sau96I	GGNCC	2 cut(s)	170, 417
SchI	GAGTC	2 cut(s)	158, 299
ScrFI	CCNGG	3 cut(s)	89, 174, 219
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	5 cut(s)	25, 81, 318, 363, 409
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	196, 245
SsiI	CCGC	2 cut(s)	52, 60
SspMI	CTAG	2 cut(s)	95, 207
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	87, 172, 217
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	196, 245
TfiI	GAWTC	2 cut(s)	114, 214
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	150, 176
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	150, 176
TspDTI	ATGAA	2 cut(s)	106, 289
TspGWI	ACGGA	2 cut(s)	35, 399
TspRI	CASTG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	86
XspI	CTAG	2 cut(s)	95, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.