Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Reverse (-)

36441613 .. 36443148

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG291800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGTTCGTCTCAGTCTGGATATTCTACTCCGACTCAAGCAGCAATCATCGCTGATCTTGGACTCTCAATGTCAAAAATTATATATTCACAATCTCTCAATTCTAAGTATCACTACAGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAAATATGGTGAAGGTGAGAAGTTTAATGCATGGTGTTGACACTGAAGCAGCAGTACAGAAGCTTAGAGGCCATTGGAACAACTGTTACAGTAAAAGTTCACAGTGTAATCATCAATTCCCTTTATTTCTGAGTTGCAGCAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

8.86

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	151, 213
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	41, 206, 294
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	178, 184
AvaII	GGWCC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
BbvI	GCAGC	2 cut(s)	53, 218
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	3 cut(s)	42, 207, 295
BlsI	GCNGC	3 cut(s)	43, 208, 296
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	26, 278
BseXI	GCAGC	2 cut(s)	53, 218
BshFI	GGCC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	25, 279
BssMI	GATC	1 cut(s)	55
Bst4CI	ACNGT	4 cut(s)	119, 242, 248, 261
BstDEI	CTNAG	4 cut(s)	12, 105, 221, 287
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	53, 218
BsuRI	GGCC	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	34
BtsIMutI	CAGTG	3 cut(s)	124, 198, 266
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	150, 212
CviAII	CATG	2 cut(s)	155, 188
CviJI	RGCY	2 cut(s)	220, 228
CviKI_1	RGCY	2 cut(s)	220, 228
CviQI	GTAC	2 cut(s)	150, 212
DdeI	CTNAG	4 cut(s)	12, 105, 221, 287
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	158, 191
FaiI	YATR	5 cut(s)	83, 85, 156, 164, 189
FatI	CATG	2 cut(s)	154, 187
Fnu4HI	GCNGC	3 cut(s)	42, 207, 295
Fsp4HI	GCNGC	3 cut(s)	42, 207, 295
GluI	GCNGC	3 cut(s)	42, 207, 295
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	158, 191
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	34, 63
HphI	GGTGA	2 cut(s)	178, 184
Hpy166II	GTNNAC	4 cut(s)	139, 152, 196, 257
Hpy188I	TCNGA	2 cut(s)	33, 288
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	4 cut(s)	139, 152, 196, 257
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	4 cut(s)	119, 242, 248, 261
HpyCH4V	TGCA	2 cut(s)	187, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	4 cut(s)	12, 105, 221, 287
Hsp92II	CATG	2 cut(s)	158, 191
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	1 cut(s)	3
Lsp1109I	GCAGC	2 cut(s)	53, 218
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MluCI	AATT	4 cut(s)	78, 100, 272, 301
MlyI	GAGTC	2 cut(s)	28, 57
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	158, 191
NsiI	ATGCAT	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	43, 208, 296
PleI	GAGTC	2 cut(s)	28, 57
PpsI	GAGTC	2 cut(s)	28, 57
PspPI	GGNCC	1 cut(s)	130
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
RsaI	GTAC	2 cut(s)	151, 213
RsaNI	GTAC	2 cut(s)	150, 212
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	42, 207, 295
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	28, 57
SetI	ASST	2 cut(s)	174, 222
SfcI	CTRYAG	1 cut(s)	115
SgeI	CNNG	6 cut(s)	30, 50, 71, 146, 167, 200
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	78, 100, 272, 301
TaaI	ACNGT	4 cut(s)	119, 242, 248, 261
TasI	AATT	4 cut(s)	78, 100, 272, 301
TatI	WGTACW	2 cut(s)	149, 211
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	3 cut(s)	124, 205, 266
TseI	GCWGC	3 cut(s)	41, 206, 294
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	124, 205, 266
VpaK11BI	GGWCC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.