Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Forward (+)

78778880 .. 78800746

Gene Structure 21867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG558600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTGGCGGCATGGAAGATTTGTGAAACCAAGATTGAATCTGCGACAACTGGATATAGTGTGCATAAATTAGATCTGTTTATCTTGGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAATACCAGATATAACATCTTCAACTGAGTTGATTCTCAGCCTCTCGAAGAACCGAGACCGCAACAACAGCTCTACCTACTCGATCCAAGTCTCCTCCATCGAAGACTCGAAGACTCGAAGACTCGAAGGCTCTCGCTCTTCTCTCACTCCTCTACTCCATCGAAGATCGGAAGCTGTCGCTCTTCTCTCACTCCTCTCTGCCCTCCTCGAAGATTCGAAGGCTCTCACTCCTCTCTGCCCTCCATCGAGGAATCAATTCTTCAACACGTTTCTTCAACTCGAATCTTCAAGCCTCCCACTCCGAATCGATGGGAAAACTGGGAGTTGCCTATTTTGGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

6.13

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	118
AciI	CCGC	2 cut(s)	8, 193
AclWI	GGATC	2 cut(s)	139, 211
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	38, 156, 397, 410, 423
AluBI	AGCT	2 cut(s)	204, 308
AluI	AGCT	2 cut(s)	204, 308
Alw26I	GTCTC	2 cut(s)	183, 229
AlwI	GGATC	2 cut(s)	139, 211
Ama87I	CYCGRG	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	3 cut(s)	243, 251, 259
BccI	CCATC	4 cut(s)	239, 300, 385, 437
BcoDI	GTCTC	2 cut(s)	183, 229
BfaI	CTAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	3 cut(s)	243, 251, 259
Bpu14I	TTCGAA	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	55, 457
BseCI	ATCGAT	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	150, 184
BseNI	ACTGG	2 cut(s)	55, 457
BseRI	GAGGAG	5 cut(s)	217, 273, 317, 329, 354
BshNI	GGYRCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	183, 229
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	73, 131, 216, 299
BspACI	CCGC	2 cut(s)	8, 193
BspCNI	CTCAG	2 cut(s)	151, 183
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	139, 211
BspQI	GCTCTTC	2 cut(s)	277, 321
BspT104I	TTCGAA	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	55, 457
BssMI	GATC	4 cut(s)	73, 131, 216, 299
Bst6I	CTCTTC	2 cut(s)	277, 321
BstBI	TTCGAA	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	159, 170
BstKTI	GATC	4 cut(s)	76, 134, 219, 302
BstMAI	GTCTC	2 cut(s)	183, 229
BstMBI	GATC	4 cut(s)	73, 131, 216, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV2I	GAAGAC	3 cut(s)	243, 251, 259
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	441
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	6 cut(s)	174, 204, 264, 308, 356, 426
CviKI_1	RGCY	6 cut(s)	174, 204, 264, 308, 356, 426
DdeI	CTNAG	2 cut(s)	159, 170
DpnI	GATC	4 cut(s)	75, 133, 218, 301
DpnII	GATC	4 cut(s)	73, 131, 216, 299
Eam1104I	CTCTTC	2 cut(s)	277, 321
EarI	CTCTTC	2 cut(s)	277, 321
Eco31I	GGTCTC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 57, 66, 146
FatI	CATG	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	15
HinfI	GANTC	9 cut(s)	38, 166, 239, 247, 255, 347, 385, 416, 438
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	304, 437
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	98, 254, 346
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	2 cut(s)	159, 170
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	73, 131, 216, 299
LguI	GCTCTTC	2 cut(s)	277, 321
LpnPI	CCDG	3 cut(s)	36, 153, 438
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	401
MalI	GATC	4 cut(s)	75, 133, 218, 301
MboI	GATC	4 cut(s)	73, 131, 216, 299
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	68, 89, 389
MlyI	GAGTC	3 cut(s)	233, 241, 249
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	4 cut(s)	73, 131, 216, 299
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	125
PciSI	GCTCTTC	2 cut(s)	277, 321
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	6 cut(s)	38, 166, 347, 385, 416, 438
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	3 cut(s)	233, 241, 249
PpsI	GAGTC	3 cut(s)	233, 241, 249
PspN4I	GGNNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	73
SapI	GCTCTTC	2 cut(s)	277, 321
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	4 cut(s)	73, 131, 216, 299
SchI	GAGTC	3 cut(s)	233, 241, 249
SetI	ASST	5 cut(s)	109, 206, 212, 310, 404
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	68, 89, 389
SsiI	CCGC	2 cut(s)	8, 193
SspMI	CTAG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	404
TasI	AATT	3 cut(s)	68, 89, 389
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	6 cut(s)	38, 166, 347, 385, 416, 438
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.