Rh1DG111800

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003074
Physical Location & Seq
Reverse (-)
20538216 .. 20548803
10588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG111800.1

Sequence Viewer

Length: 936 bp
ATGTCAGTCTCTTTTGCATTTCTGATAAAAAGTCCTAGTAGTGTACTTCCAACAACTAGGGAAGAGAAAAAAGAGTTCAAGGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAGTACCAGATATAACATCTTCAACTGAGCACTATGTAGCTTTACAGAAAACCTACCAAGCCAAGGCTGAGGCTGATTTTCTAGTATTGACCAAAGGAAATCATATCACTCCAGGGACTCGTCGAGTTCTGGTACCTCCCAGGCAGGCTGTTGTCATTAAGCGGTGGTTTGGAATGTACTCCAAGACCCTGTTATCTGGAGAATATTTCTTAATTCCGTATTTTGATAAAATTGCTTCTGTGCATTGCTTGAAACCCAAGACCATAAATCTTCTGGCCCAGAAAGCTATCACCAAAAACAATGTGGGCCTTACTGTTACTAGCCAGTTAACTCTCAAGATTTTGGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCAGAGTACCCAGTCTGATGCAATTGGTGAACTCACTGTTGAACACATAATGGAGGATCAGCAAAGCCTCAATCAACACATATTGTCATTTCTCAACGACAGGATCTGTAGATGGGGCTTGTCTTGTGAGGCGTTTGAGATAAATGACATAGCAGTTCCACATGAGGTGAAGAAAGCTATTGAGGACTTTAAGGCAGCCAAAGCAAAGAGAGCTGCCATACTGGAGTCAGTTGCTGACTTCTTCTCCAAGGCTACTAAGGAAGCTGGTGGGAGAAGAGATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGAGTGGCAGGTAATGTAAACAACAAGCAGTTTAGTCACAGTGTTGTGCATTATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

311

Amino Acids

34.47

Weight (kDa)

8.7

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 87 - 249 3.7e-20 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 112, 259
AccI GTMKAC 1 cut(s) 498
AciI CCGC 2 cut(s) 289, 494
AclWI GGATC 3 cut(s) 133, 594, 641
AcsI RAATTY 2 cut(s) 83, 830
AfaI GTAC 5 cut(s) 45, 132, 261, 305, 538
AfiI CCNNNNNNNGG 2 cut(s) 122, 190
AgsI TTSAA 4 cut(s) 79, 150, 379, 572
AjnI CCWGG 2 cut(s) 238, 266
AluBI AGCT 8 cut(s) 167, 413, 485, 707, 743, 794, 818, 842
AluI AGCT 8 cut(s) 167, 413, 485, 707, 743, 794, 818, 842
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 3 cut(s) 133, 594, 641
AlwNI CAGNNNCTG 2 cut(s) 636, 764
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 2 cut(s) 402, 433
ApeKI GCWGC 2 cut(s) 725, 743
ApoI RAATTY 2 cut(s) 83, 830
Asp718I GGTACC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 403, 433, 850
AsuHPI GGTGA 5 cut(s) 119, 409, 569, 709, 816
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 850
BanI GGYRCC 2 cut(s) 112, 259
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 730, 737
BccI CCATC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 240, 268
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 5 cut(s) 36, 57, 89, 209, 447
BfmI CTRYAG 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 875
BisI GCNGC 2 cut(s) 726, 744
BlsI GCNGC 2 cut(s) 727, 745
Bme1390I CCNGG 2 cut(s) 240, 268
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 403, 433, 850
BmiI GGNNCC 3 cut(s) 114, 261, 474
BmrFI CCNGG 2 cut(s) 240, 268
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 535
BpmI CTGGAG 3 cut(s) 222, 345, 773
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 446, 866
BsaJI CCNNGG 4 cut(s) 189, 239, 266, 777
BsaWI WCCGGW 1 cut(s) 852
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 758, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 190
Bse1I ACTGG 3 cut(s) 451, 541, 756
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 240, 268
BseDI CCNNGG 4 cut(s) 189, 239, 266, 777
BseLI CCNNNNNNNGG 2 cut(s) 122, 190
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 144, 186, 545
BseNI ACTGG 3 cut(s) 451, 541, 756
BseRI GAGGAG 1 cut(s) 891
BseXI GCAGC 2 cut(s) 730, 737
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 404, 435
BshNI GGYRCC 2 cut(s) 112, 259
BsiEI CGRYCG 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 853
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 122, 190
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 404, 435
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 125, 586, 633
BspACI CCGC 2 cut(s) 289, 494
BspANI GGCC 2 cut(s) 404, 435
BspCNI CTCAG 3 cut(s) 145, 187, 544
BspLI GGNNCC 3 cut(s) 114, 261, 474
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 3 cut(s) 133, 594, 641
BspT107I GGYRCC 2 cut(s) 112, 259
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 3 cut(s) 451, 541, 756
BssECI CCNNGG 4 cut(s) 189, 239, 266, 777
BssMI GATC 3 cut(s) 125, 586, 633
BssT1I CCWWGG 2 cut(s) 189, 777
Bst2UI CCWGG 2 cut(s) 240, 268
Bst4CI ACNGT 3 cut(s) 442, 568, 917
Bst6I CTCTTC 2 cut(s) 57, 799
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 4 cut(s) 153, 195, 531, 786
BstKTI GATC 3 cut(s) 128, 589, 636
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 125, 586, 633
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 4 cut(s) 410, 491, 731, 740
BstNI CCWGG 2 cut(s) 240, 268
BstSCI CCNGG 2 cut(s) 238, 266
BstSFI CTRYAG 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 730, 737
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
BsuRI GGCC 2 cut(s) 404, 435
BtsIMutI CAGTG 2 cut(s) 564, 922
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 1 cut(s) 273
CaiI CAGNNNCTG 2 cut(s) 636, 764
Cfr13I GGNCC 3 cut(s) 403, 433, 850
Csp6I GTAC 5 cut(s) 44, 131, 260, 304, 537
CviAII CATG 1 cut(s) 692
CviQI GTAC 5 cut(s) 44, 131, 260, 304, 537
DdeI CTNAG 4 cut(s) 153, 195, 531, 786
DpnI GATC 3 cut(s) 127, 588, 635
DpnII GATC 3 cut(s) 125, 586, 633
DraI TTTAAA 1 cut(s) 835
Eam1104I CTCTTC 2 cut(s) 57, 799
EarI CTCTTC 2 cut(s) 57, 799
Eco130I CCWWGG 2 cut(s) 189, 777
Eco47I GGWCC 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 238, 266
EcoT14I CCWWGG 2 cut(s) 189, 777
ErhI CCWWGG 2 cut(s) 189, 777
FaeI CATG 1 cut(s) 695
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 691
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 2 cut(s) 726, 744
Fsp4HI GCNGC 2 cut(s) 726, 744
FspBI CTAG 5 cut(s) 36, 57, 89, 209, 447
GluI GCNGC 2 cut(s) 726, 744
GsuI CTGGAG 3 cut(s) 222, 345, 773
HaeIII GGCC 2 cut(s) 404, 435
HapII CCGG 1 cut(s) 853
Hin1II CATG 1 cut(s) 695
HincII GTYRAC 2 cut(s) 456, 499
HindII GTYRAC 2 cut(s) 456, 499
HinfI GANTC 2 cut(s) 244, 755
HpaI GTTAAC 1 cut(s) 456
HpaII CCGG 1 cut(s) 853
HphI GGTGA 5 cut(s) 119, 409, 569, 709, 816
Hpy166II GTNNAC 5 cut(s) 44, 456, 499, 560, 895
Hpy188I TCNGA 3 cut(s) 24, 534, 547
Hpy188III TCNNGA 3 cut(s) 324, 463, 845
Hpy8I GTNNAC 5 cut(s) 44, 456, 499, 560, 895
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 2 cut(s) 92, 850
HpyCH4III ACNGT 3 cut(s) 442, 568, 917
HpyCH4V TGCA 4 cut(s) 17, 370, 551, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 491, 731, 740
HpyF3I CTNAG 4 cut(s) 153, 195, 531, 786
Hsp92II CATG 1 cut(s) 695
KpnI GGTACC 1 cut(s) 263
KspAI GTTAAC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 125, 586, 633
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 730, 737
LweI GCATC 1 cut(s) 538
MaeI CTAG 5 cut(s) 36, 57, 89, 209, 447
MaeIII GTNAC 2 cut(s) 442, 911
MalI GATC 3 cut(s) 127, 588, 635
MboI GATC 3 cut(s) 125, 586, 633
MboII GAAGA 6 cut(s) 74, 138, 389, 712, 763, 816
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 5 cut(s) 83, 339, 357, 552, 830
MlyI GAGTC 2 cut(s) 238, 764
MmeI TCCRAC 1 cut(s) 74
MseI TTAA 5 cut(s) 285, 338, 455, 720, 834
MspI CCGG 1 cut(s) 853
MspR9I CCNGG 2 cut(s) 240, 268
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 2 cut(s) 240, 268
MwoI GCNNNNNNNGC 4 cut(s) 410, 491, 731, 740
NdeII GATC 3 cut(s) 125, 586, 633
NlaIII CATG 1 cut(s) 695
NlaIV GGNNCC 3 cut(s) 114, 261, 474
NmuCI GTSAC 1 cut(s) 911
PaeR7I CTCGAG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 727, 745
PleI GAGTC 2 cut(s) 238, 763
PpsI GAGTC 2 cut(s) 238, 763
Psp6I CCWGG 2 cut(s) 238, 266
PspGI CCWGG 2 cut(s) 238, 266
PspN4I GGNNCC 3 cut(s) 114, 261, 474
PspPI GGNCC 3 cut(s) 403, 433, 850
PspXI VCTCGAGB 1 cut(s) 119
PstNI CAGNNNCTG 2 cut(s) 636, 764
PsuI RGATCY 1 cut(s) 633
RsaI GTAC 5 cut(s) 45, 132, 261, 305, 538
RsaNI GTAC 5 cut(s) 44, 131, 260, 304, 537
SalI GTCGAC 1 cut(s) 497
SaqAI TTAA 5 cut(s) 285, 338, 455, 720, 834
SatI GCNGC 2 cut(s) 726, 744
Sau3AI GATC 3 cut(s) 125, 586, 633
Sau96I GGNCC 3 cut(s) 403, 433, 850
SchI GAGTC 2 cut(s) 238, 764
ScrFI CCNGG 2 cut(s) 240, 268
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 637
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 850
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 3 cut(s) 119, 461, 845
SmoI CTYRAG 3 cut(s) 119, 461, 845
Sse9I AATT 5 cut(s) 83, 339, 357, 552, 830
SsiI CCGC 2 cut(s) 289, 494
SspI AATATT 1 cut(s) 332
SspMI CTAG 5 cut(s) 36, 57, 89, 209, 447
StyD4I CCNGG 2 cut(s) 238, 266
StyI CCWWGG 2 cut(s) 189, 777
TaaI ACNGT 3 cut(s) 442, 568, 917
TaqI TCGA 3 cut(s) 120, 250, 498
TasI AATT 5 cut(s) 83, 339, 357, 552, 830
TatI WGTACW 2 cut(s) 43, 303
Tru1I TTAA 5 cut(s) 285, 338, 455, 720, 834
Tru9I TTAA 5 cut(s) 285, 338, 455, 720, 834
TscAI CASTG 2 cut(s) 571, 922
TseFI GTSAC 1 cut(s) 911
TseI GCWGC 2 cut(s) 725, 743
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 571, 922
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 2 cut(s) 83, 830
XcmI CCANNNNNNNNNTGG 2 cut(s) 397, 427
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 5 cut(s) 36, 57, 89, 209, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.