Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Forward (+)

77425374 .. 77428953

Gene Structure 3580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTACACTTGTCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGGTGACATTGTGTATTTGCTTGATGCTTGGAATTGCAGTGCTAGTGGGATTCCAGGAGAGAATAAGGGTGTTATTATACAATTCCTCTTGATCATGGTCAATCTGGGAGGACAGATAGCCTCTTGTATATCCTTCATGGACTCTGCTACCCTATGCTTCGATGACTATTGGTTTTGTAAGTCTCCTTTTCAGCAGCTCATCTCTTATTTGGGATTATACGGATCTGGGTTTGAGTTTGAAGGTCTTAAACATACTGTGATTGAGTCCAAGCCTGAACATTTTCTGGATGACCTTCGTTTGAATAATCCATGGCCTGAGCTTAGAAGTCCCAGTGGTGTACTTCCAACCACTAGGGAAGAGAAAAAAGAGTTCAAGGAGCTTATCAAAACTAGGATGACTGCAGATGATGTAGATAACTACAGTGAAGCATTGAGAACTCCTTTAAAGTCTTTACTCCTTGAGGAATTAGAATTCCTAGCAAATGAAGGTGGAGGTGAGGCACCCCTCGAGGGATCAATACCAGATATAACATCTTCAACTGAGCACTATGTAGCTTTACAGAAAACCTACCAAGCCAAAGCTGAGGCTGATTTTCTAGTATTGACCAAAGGGTTAGGACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

4.59

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	274, 565
AcsI	RAATTY	1 cut(s)	515
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	284, 346, 418, 582
AjnI	CCWGG	2 cut(s)	43, 97
AluBI	AGCT	5 cut(s)	241, 364, 424, 599, 626
AluI	AGCT	5 cut(s)	241, 364, 424, 599, 626
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	274, 565
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	40, 356
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	29, 59, 551
AvaI	CYCGRG	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	45, 99
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	5 cut(s)	87, 396, 435, 521, 641
BfmI	CTRYAG	2 cut(s)	444, 463
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	45, 99
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	45, 99
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	369
Bpu10I	CCTNAGC	2 cut(s)	360, 627
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	43, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	45, 99
BseDI	CCNNGG	2 cut(s)	43, 353
BseGI	GGATG	2 cut(s)	337, 444
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	3 cut(s)	351, 576, 618
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	2 cut(s)	42, 358
BshNI	GGYRCC	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	42, 358
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	135, 266, 557
Bsp19I	CCATGG	1 cut(s)	353
BspANI	GGCC	2 cut(s)	42, 358
BspCNI	CTCAG	3 cut(s)	352, 577, 619
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	274, 565
BspT107I	GGYRCC	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	43, 353
BssMI	GATC	3 cut(s)	135, 266, 557
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	45, 99
Bst4CI	ACNGT	2 cut(s)	301, 467
Bst6I	CTCTTC	1 cut(s)	396
BstDEI	CTNAG	4 cut(s)	360, 365, 585, 627
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	337, 444
BstKTI	GATC	3 cut(s)	138, 269, 560
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	135, 266, 557
BstNI	CCWGG	2 cut(s)	45, 99
BstSCI	CCNGG	2 cut(s)	43, 97
BstSFI	CTRYAG	2 cut(s)	444, 463
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	42, 358
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	337, 444
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	88, 382, 472
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	139, 181, 354
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	360, 365, 585, 627
DpnI	GATC	3 cut(s)	137, 268, 559
DpnII	GATC	3 cut(s)	135, 266, 557
DraI	TTTAAA	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	43, 97
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	142, 184, 357
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	138, 180, 353
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	344, 451
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	5 cut(s)	87, 396, 435, 521, 641
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	42, 358
Hin1II	CATG	3 cut(s)	142, 184, 357
HinfI	GANTC	5 cut(s)	20, 94, 185, 308, 663
HphI	GGTGA	3 cut(s)	29, 59, 551
Hpy166II	GTNNAC	2 cut(s)	6, 383
Hpy188III	TCNNGA	2 cut(s)	133, 329
Hpy8I	GTNNAC	2 cut(s)	6, 383
HpyAV	CCTTC	4 cut(s)	187, 278, 347, 524
HpyCH4III	ACNGT	2 cut(s)	301, 467
HpyCH4V	TGCA	2 cut(s)	81, 446
HpyF3I	CTNAG	4 cut(s)	360, 365, 585, 627
Hsp92II	CATG	3 cut(s)	142, 184, 357
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 266, 557
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	5 cut(s)	87, 396, 435, 521, 641
MaeIII	GTNAC	3 cut(s)	21, 31, 47
MalI	GATC	3 cut(s)	137, 268, 559
MboI	GATC	3 cut(s)	135, 266, 557
MboII	GAAGA	3 cut(s)	413, 570, 658
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	4 cut(s)	76, 125, 509, 515
MlyI	GAGTC	4 cut(s)	29, 179, 317, 657
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	9 cut(s)	140, 146, 175, 499, 530, 535, 547, 560, 622
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	2 cut(s)	291, 488
MspR9I	CCNGG	2 cut(s)	45, 99
MvaI	CCWGG	2 cut(s)	45, 99
NcoI	CCATGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	135, 266, 557
NlaIII	CATG	3 cut(s)	142, 184, 357
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	3 cut(s)	21, 31, 47
PaeR7I	CTCGAG	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	4 cut(s)	28, 179, 316, 657
PpsI	GAGTC	4 cut(s)	28, 179, 316, 657
Psp6I	CCWGG	2 cut(s)	43, 97
PspGI	CCWGG	2 cut(s)	43, 97
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	291, 488
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	135, 266, 557
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	4 cut(s)	29, 179, 317, 657
ScrFI	CCNGG	2 cut(s)	45, 99
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	444, 463
Sfr274I	CTCGAG	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	503, 551
SmoI	CTYRAG	2 cut(s)	503, 551
Sse9I	AATT	4 cut(s)	76, 125, 509, 515
SspMI	CTAG	5 cut(s)	87, 396, 435, 521, 641
StyD4I	CCNGG	2 cut(s)	43, 97
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	301, 467
TaqI	TCGA	2 cut(s)	204, 552
TasI	AATT	4 cut(s)	76, 125, 509, 515
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	291, 488
Tru9I	TTAA	2 cut(s)	291, 488
TscAI	CASTG	3 cut(s)	88, 382, 472
TseFI	GTSAC	3 cut(s)	21, 31, 47
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	3 cut(s)	21, 31, 47
TspDTI	ATGAA	2 cut(s)	169, 543
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	88, 382, 472
XapI	RAATTY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	5 cut(s)	87, 396, 435, 521, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.