Rh5CG585600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
83022422 .. 83065241
42820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG585600.1

Sequence Viewer

Length: 303 bp
ATGGTGGCGGCATTGAAGATTTGTGAAACCAAGATTGAATCTGCGACAACTGGATATAGTGTGCATAAATTAGATCTGTTTATCTTGCTAATAAGATCATATGGCTTTAAGACATTAAGTACCTCCGGATATACTGTGAAAGCTTTCTGGAGGAAGAACACTTCTGATTATGTTCTGATCTGGCGAGAAGCAAAATATAATCTTTGCATCCAGAGAACAAAAGAAGAGAATTGCTGCAATAAGACGAGTATGCTTTTCTACACTTATGGCATACAAATAGCAAAGGTGATGGCCTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.54

Weight (kDa)

9.23

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 1 cut(s) 8
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 2 cut(s) 16, 38
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 298
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 283
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 9, 235
BlsI GCNGC 2 cut(s) 10, 236
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 125
BseGI GGATG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 293
BsiSI CCGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 293
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 73, 95, 177
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 293
BspEI TCCGGA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 55
BssMI GATC 3 cut(s) 73, 95, 177
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 3 cut(s) 76, 98, 180
BstMBI GATC 3 cut(s) 73, 95, 177
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 120
CviJI RGCY 3 cut(s) 105, 143, 293
CviKI_1 RGCY 3 cut(s) 105, 143, 293
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 75, 97, 179
DpnII GATC 3 cut(s) 73, 95, 177
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 9, 235
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 9, 235
GluI GCNGC 2 cut(s) 9, 235
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 166, 177, 298
Hpy188III TCNNGA 3 cut(s) 126, 148, 211
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 64, 207, 237
HpyF3I CTNAG 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 3 cut(s) 73, 95, 177
LpnPI CCDG 5 cut(s) 36, 133, 139, 166, 224
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 216
MalI GATC 3 cut(s) 75, 97, 179
MboI GATC 3 cut(s) 73, 95, 177
MboII GAAGA 3 cut(s) 28, 166, 236
MflI RGATCY 1 cut(s) 73
MluCI AATT 2 cut(s) 68, 229
MnlI CCTC 2 cut(s) 133, 144
MroI TCCGGA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 108, 116
MspI CCGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 73, 95, 177
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 10, 236
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 108, 116
SatI GCNGC 2 cut(s) 9, 235
Sau3AI GATC 3 cut(s) 73, 95, 177
SetI ASST 3 cut(s) 125, 145, 288
SfaNI GCATC 1 cut(s) 216
SgeI CNNG 9 cut(s) 43, 63, 97, 138, 160, 193, 197, 223, 258
Sse9I AATT 2 cut(s) 68, 229
SsiI CCGC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 136
TasI AATT 2 cut(s) 68, 229
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 108, 116
Tru9I TTAA 2 cut(s) 108, 116
TseI GCWGC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.