Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Reverse (-)

5767435 .. 5773212

Gene Structure 5778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATAGGACAAGTGGAGTGCGATCTTGTTGTCGTGAAAATAATATTAGGGAAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTATTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGTGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTAATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGTAAAGGATTGTCGGGTTCTACACTTGTCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGGTGACATTGTGTATTTGCTTGATGCTTGGAATTGCAGTGCTAGTGGGATTCCAGGAGAGAATATGGGTGTTATTATACAATTCCTCTTGATCATGGTCAATCTGGGAGGACAGATAGCCTCTTGTATATCCTTCATGGACTCTGCTAACCTATGCTTCGATGACTATTGGTTTTGTAAGTCTCCTTTTCAGCAGCTCATCTCTTATTTGGGATTATACAGATCTGGGTTTGAGTTTGAAGGTCTTAAACATACTGTGATTGAGTCCAAGCCTGAACATTTTCTGGATGACGTTAGTTTGAATAATCCATGGCCTGAGCTTAGAAGTGGTGTACTTCCAACCACTAGGGAAGAGAAAAAAGAGTTCAAGGAGCTTATCAAAACTAGGATGACTGCAGATGATGTAGATAACTACAGTGAAGCATTGAGAACTCCTTTAAAGTCTTTACTCCTTGAGGAATTAGAATTCCTAGCAAATGAAGGTGGAGGTGAGGCACCCCTCGAGGGATCAATACCAGATATAACATCTTCAACTGAGCACTACGTAGCTTTACAGAAAACCTACCAAGCCAAAGCTGAGGCTGATTTTCTAGTATTGACCAAAGGGTTAGGACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

304

Amino Acids

33.12

Weight (kDa)

4.81

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	791
AccB1I	GGYRCC	1 cut(s)	784
AclWI	GGATC	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	755
AfaI	GTAC	2 cut(s)	116, 624
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	5 cut(s)	211, 530, 592, 658, 822
AjnI	CCWGG	2 cut(s)	289, 343
AluBI	AGCT	5 cut(s)	487, 610, 664, 839, 866
AluI	AGCT	5 cut(s)	487, 610, 664, 839, 866
Alw21I	GWGCWC	1 cut(s)	831
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	805
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	286, 602
ApeKI	GCWGC	2 cut(s)	155, 484
ApoI	RAATTY	1 cut(s)	755
Asp700I	GAANNNNTTC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	4 cut(s)	83, 275, 305, 791
AvaI	CYCGRG	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	784
Bbv12I	GWGCWC	1 cut(s)	831
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	2 cut(s)	142, 496
BciT130I	CCWGG	2 cut(s)	291, 345
BclI	TGATCA	2 cut(s)	88, 381
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	6 cut(s)	78, 333, 636, 675, 761, 881
BfmI	CTRYAG	2 cut(s)	684, 703
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	2 cut(s)	156, 485
BlsI	GCNGC	2 cut(s)	157, 486
Bme1390I	CCNGG	2 cut(s)	291, 345
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	2 cut(s)	291, 345
BmsI	GCATC	1 cut(s)	304
Bpu10I	CCTNAGC	2 cut(s)	606, 867
BpuEI	CTTGAG	2 cut(s)	200, 764
BsaAI	YACGTR	1 cut(s)	835
BsaJI	CCNNGG	2 cut(s)	289, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	291, 345
BseDI	CCNNGG	2 cut(s)	289, 599
BseGI	GGATG	2 cut(s)	583, 684
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	3 cut(s)	597, 816, 858
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	142, 496
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	288, 604
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	831
BsiHKCI	CYCGRG	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	288, 604
BsoBI	CYCGRG	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp143I	GATC	5 cut(s)	22, 88, 381, 512, 797
Bsp19I	CCATGG	1 cut(s)	599
BspANI	GGCC	2 cut(s)	288, 604
BspCNI	CTCAG	3 cut(s)	598, 817, 859
BspLI	GGNNCC	1 cut(s)	786
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	805
BspT107I	GGYRCC	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	289, 599
BssMI	GATC	5 cut(s)	22, 88, 381, 512, 797
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	291, 345
Bst4CI	ACNGT	2 cut(s)	547, 707
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	835
BstDEI	CTNAG	4 cut(s)	606, 611, 825, 867
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	583, 684
BstKTI	GATC	5 cut(s)	25, 91, 384, 515, 800
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	5 cut(s)	22, 88, 381, 512, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 164
BstNI	CCWGG	2 cut(s)	291, 345
BstSCI	CCNGG	2 cut(s)	289, 343
BstSFI	CTRYAG	2 cut(s)	684, 703
BstSNI	TACGTA	1 cut(s)	835
BstV1I	GCAGC	2 cut(s)	142, 496
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	288, 604
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	583, 684
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	66, 334, 712
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	115, 623
CviAII	CATG	3 cut(s)	385, 427, 600
CviQI	GTAC	2 cut(s)	115, 623
DdeI	CTNAG	4 cut(s)	606, 611, 825, 867
DpnI	GATC	5 cut(s)	24, 90, 383, 514, 799
DpnII	GATC	5 cut(s)	22, 88, 381, 512, 797
DraI	TTTAAA	1 cut(s)	729
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco105I	TACGTA	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	289, 343
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	3 cut(s)	388, 430, 603
FatI	CATG	3 cut(s)	384, 426, 599
FbaI	TGATCA	2 cut(s)	88, 381
Fnu4HI	GCNGC	2 cut(s)	156, 485
FokI	GGATG	2 cut(s)	590, 691
Fsp4HI	GCNGC	2 cut(s)	156, 485
FspBI	CTAG	6 cut(s)	78, 333, 636, 675, 761, 881
GluI	GCNGC	2 cut(s)	156, 485
HaeIII	GGCC	2 cut(s)	288, 604
Hin1II	CATG	3 cut(s)	388, 430, 603
HinfI	GANTC	6 cut(s)	60, 266, 340, 431, 554, 903
HphI	GGTGA	4 cut(s)	83, 275, 305, 791
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	4 cut(s)	34, 179, 379, 575
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	3 cut(s)	433, 524, 764
HpyCH4III	ACNGT	2 cut(s)	547, 707
HpyCH4IV	ACGT	4 cut(s)	117, 224, 582, 834
HpyCH4V	TGCA	3 cut(s)	66, 327, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 164
HpyF3I	CTNAG	4 cut(s)	606, 611, 825, 867
HpySE526I	ACGT	4 cut(s)	117, 224, 582, 834
Hsp92II	CATG	3 cut(s)	388, 430, 603
Ksp22I	TGATCA	2 cut(s)	88, 381
Kzo9I	GATC	5 cut(s)	22, 88, 381, 512, 797
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	142, 496
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	6 cut(s)	78, 333, 636, 675, 761, 881
MaeII	ACGT	4 cut(s)	117, 224, 582, 834
MaeIII	GTNAC	4 cut(s)	225, 267, 277, 293
MalI	GATC	5 cut(s)	24, 90, 383, 514, 799
MboI	GATC	5 cut(s)	22, 88, 381, 512, 797
MboII	GAAGA	4 cut(s)	223, 653, 810, 898
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	4 cut(s)	322, 371, 749, 755
MlyI	GAGTC	4 cut(s)	275, 425, 563, 897
MmeI	TCCRAC	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	2 cut(s)	537, 728
MspR9I	CCNGG	2 cut(s)	291, 345
MvaI	CCWGG	2 cut(s)	291, 345
MwoI	GCNNNNNNNGC	2 cut(s)	155, 164
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	5 cut(s)	22, 88, 381, 512, 797
NlaIII	CATG	3 cut(s)	388, 430, 603
NlaIV	GGNNCC	1 cut(s)	786
NmuCI	GTSAC	3 cut(s)	267, 277, 293
PaeR7I	CTCGAG	1 cut(s)	791
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	60, 340
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	157, 486
PleI	GAGTC	4 cut(s)	274, 425, 562, 897
PpsI	GAGTC	4 cut(s)	274, 425, 562, 897
Ppu21I	YACGTR	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	289, 343
PspGI	CCWGG	2 cut(s)	289, 343
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	116, 624
RsaNI	GTAC	2 cut(s)	115, 623
SaqAI	TTAA	2 cut(s)	537, 728
SatI	GCNGC	2 cut(s)	156, 485
Sau3AI	GATC	5 cut(s)	22, 88, 381, 512, 797
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	4 cut(s)	275, 425, 563, 897
ScrFI	CCNGG	2 cut(s)	291, 345
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	2 cut(s)	684, 703
Sfr274I	CTCGAG	1 cut(s)	791
SlaI	CTCGAG	1 cut(s)	791
SmlI	CTYRAG	3 cut(s)	179, 743, 791
SmoI	CTYRAG	3 cut(s)	179, 743, 791
SnaBI	TACGTA	1 cut(s)	835
Sse9I	AATT	4 cut(s)	322, 371, 749, 755
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	6 cut(s)	78, 333, 636, 675, 761, 881
StyD4I	CCNGG	2 cut(s)	289, 343
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	547, 707
TaiI	ACGT	4 cut(s)	120, 227, 585, 837
TaqI	TCGA	2 cut(s)	450, 792
TasI	AATT	4 cut(s)	322, 371, 749, 755
TatI	WGTACW	1 cut(s)	622
TfiI	GAWTC	2 cut(s)	60, 340
Tru1I	TTAA	2 cut(s)	537, 728
Tru9I	TTAA	2 cut(s)	537, 728
TscAI	CASTG	3 cut(s)	73, 334, 712
TseFI	GTSAC	3 cut(s)	267, 277, 293
TseI	GCWGC	2 cut(s)	155, 484
Tsp45I	GTSAC	3 cut(s)	267, 277, 293
TspDTI	ATGAA	2 cut(s)	415, 783
TspRI	CASTG	3 cut(s)	73, 334, 712
XapI	RAATTY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	6 cut(s)	78, 333, 636, 675, 761, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.