Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Reverse (-)

14463674 .. 14465118

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGGTTTGGGTAAAAATATGGGATTCGGTAATCAAGTTCAATGGAGGTTTGGGTACAAATATTGGATTCGGTGGCCCCAAGTATGAATCTCTCAATTCTAAGTATCACTACGGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAAATATGGTGAAGCCAACTAATTTTTCACGTTCTGTTGTTCGGGGCAATGATTTGGGAAGTGATGCCACCGGGCAACCTGCTACGCAACTACGGAGGAAACTTAATATTCATATGGCTGAGGTCGTCTATAAGACGCCCTATACGTTAGATGATGGAGCAGTTACACTTGGATCAAAGAAGACCACTATCTCTGTGATTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

9.22

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	334
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	58, 148
AgsI	TTSAA	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AleI	CACNNNNGTG	1 cut(s)	114
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	77, 127
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	341
BbvCI	CCTCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	77, 127
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	225
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	326, 355
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	208
BssMI	GATC	2 cut(s)	326, 355
BssNI	GRCGYC	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	102, 273
BstKTI	GATC	2 cut(s)	329, 358
BstMBI	GATC	2 cut(s)	326, 355
BstSCI	CCNGG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	77, 127
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	57, 147
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	78, 169, 272
CviKI_1	RGCY	3 cut(s)	78, 169, 272
CviQI	GTAC	2 cut(s)	57, 147
DdeI	CTNAG	2 cut(s)	102, 273
DpnI	GATC	2 cut(s)	328, 357
DpnII	GATC	2 cut(s)	326, 355
Eco47I	GGWCC	1 cut(s)	127
FaeI	CATG	1 cut(s)	155
FaiI	YATR	8 cut(s)	22, 87, 153, 161, 267, 269, 285, 297
FatI	CATG	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	3 cut(s)	26, 69, 89
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	136, 149
Hpy8I	GTNNAC	2 cut(s)	136, 149
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	184, 299
HpyF3I	CTNAG	2 cut(s)	102, 273
HpySE526I	ACGT	2 cut(s)	184, 299
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	326, 355
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	2 cut(s)	238, 246
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	2 cut(s)	184, 299
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	328, 357
MboI	GATC	2 cut(s)	326, 355
MboII	GAAGA	1 cut(s)	346
MluCI	AATT	2 cut(s)	97, 175
MnlI	CCTC	3 cut(s)	41, 243, 268
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	226
NciI	CCSGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	2 cut(s)	326, 355
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	26, 69, 89
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	77, 127
RsaI	GTAC	2 cut(s)	58, 148
RsaNI	GTAC	2 cut(s)	57, 147
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	326, 355
Sau96I	GGNCC	2 cut(s)	77, 127
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	6 cut(s)	9, 52, 187, 235, 279, 302
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	97, 175
SspI	AATATT	2 cut(s)	64, 262
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	187, 302
TaqI	TCGA	1 cut(s)	358
TasI	AATT	2 cut(s)	97, 175
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	26, 69, 89
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	102, 168, 254
TspGWI	ACGGA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.