Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Forward (+)

24085717 .. 24090800

Gene Structure 5084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCCTTCATTTTCTCTATGGTTTTCTGGGTGCAGAAACATACTGTGATTGAGTCCAAGCCTGAACATTTTCTGGATGACCTTCGTTTGAATAATCCATGGCCTGAGCTTAGAAGGTACAGAGAGCTTATCAAAACTAGGATGACTGCAGATGATGTAGATAACTACAGTGAAGCATTGAGAACTCCTTTAAAGTCTTTACTCCTTGAGGAATTAGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTTGAGGGATCAGTACCAGATATAACATCTTCAACTGAGCACTATGTAGCTTTACAGAAAACCTACCAAGCCAAGGCTGAGGCTGATTTTCTAGTATTGACCAAAGGAGATCCTAGTAGCAACTCAAAGGCAACTGTTATAAGTTTCTGCAAGAATGCTAGAAAACTCAAAGTAAGTAGATTTCCAAGGACTGTCTTCTTGATGCTCTCTTTGGCTGCTCAGCTCTGCCACTTATCCTTATCATCCTATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

168

Amino Acids

19.14

Weight (kDa)

6.91

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	268, 356
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	119, 267
AfiI	CCNNNNNNNGG	2 cut(s)	257, 325
AgsI	TTSAA	2 cut(s)	91, 285
AluBI	AGCT	4 cut(s)	109, 127, 302, 475
AluI	AGCT	4 cut(s)	109, 127, 302, 475
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	268, 356
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	454
BfaI	CTAG	5 cut(s)	138, 224, 344, 366, 411
BfmI	CTRYAG	2 cut(s)	147, 166
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	439
Bpu10I	CCTNAGC	2 cut(s)	105, 330
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	227, 275
BsaJI	CCNNGG	3 cut(s)	98, 324, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 325
BseDI	CCNNGG	3 cut(s)	98, 324, 437
BseGI	GGATG	3 cut(s)	82, 147, 494
BseLI	CCNNNNNNNGG	2 cut(s)	257, 325
BseMII	CTCAG	4 cut(s)	96, 279, 321, 485
BseXI	GCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	257, 325
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	260, 361
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	98
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	4 cut(s)	97, 280, 322, 484
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	268, 356
BspT107I	GGYRCC	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	98, 324, 437
BssMI	GATC	2 cut(s)	260, 361
BssT1I	CCWWGG	3 cut(s)	98, 324, 437
Bst4CI	ACNGT	4 cut(s)	46, 170, 388, 445
BstDEI	CTNAG	5 cut(s)	105, 110, 288, 330, 471
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	82, 147, 494
BstKTI	GATC	2 cut(s)	263, 364
BstMBI	GATC	2 cut(s)	260, 361
BstSFI	CTRYAG	2 cut(s)	147, 166
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	82, 147, 494
BtsIMutI	CAGTG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	118, 266
CviAII	CATG	1 cut(s)	99
CviQI	GTAC	2 cut(s)	118, 266
DdeI	CTNAG	5 cut(s)	105, 110, 288, 330, 471
DpnI	GATC	2 cut(s)	262, 363
DpnII	GATC	2 cut(s)	260, 361
DraI	TTTAAA	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	98, 324, 437
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	3 cut(s)	98, 324, 437
ErhI	CCWWGG	3 cut(s)	98, 324, 437
FaeI	CATG	1 cut(s)	102
FaiI	YATR	6 cut(s)	20, 42, 100, 275, 297, 392
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	89, 154, 481
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	5 cut(s)	138, 224, 344, 366, 411
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	254
Hpy188III	TCNNGA	2 cut(s)	74, 451
HpyAV	CCTTC	4 cut(s)	16, 92, 108, 227
HpyCH4III	ACNGT	4 cut(s)	46, 170, 388, 445
HpyCH4V	TGCA	3 cut(s)	34, 149, 402
HpyF3I	CTNAG	5 cut(s)	105, 110, 288, 330, 471
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	260, 361
LpnPI	CCDG	5 cut(s)	13, 59, 75, 117, 282
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	5 cut(s)	138, 224, 344, 366, 411
MalI	GATC	2 cut(s)	262, 363
MboI	GATC	2 cut(s)	260, 361
MboII	GAAGA	2 cut(s)	273, 439
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	212, 218
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	202, 238, 250, 325
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	260, 361
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	119, 267
RsaNI	GTAC	2 cut(s)	118, 266
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	2 cut(s)	260, 361
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	84, 111, 119, 129, 238, 304, 317, 477
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	147, 166
SmlI	CTYRAG	2 cut(s)	206, 254
SmoI	CTYRAG	2 cut(s)	206, 254
Sse9I	AATT	2 cut(s)	212, 218
SspMI	CTAG	5 cut(s)	138, 224, 344, 366, 411
StyI	CCWWGG	3 cut(s)	98, 324, 437
TaaI	ACNGT	4 cut(s)	46, 170, 388, 445
TasI	AATT	2 cut(s)	212, 218
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	5 cut(s)	138, 224, 344, 366, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.