Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

6759716 .. 6760321

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTCAAGGTTAACAGCCCCCATAGAGGAGACCCTGAGAATTTGCCAGAAGTTTTCAGCAAAGTGATTATCAGCAACAGAAGGTTTCTCCAGATTTTGATAAAAATGTTCTATAATTTATTATCGGAGGGCTACAAGGACTTGGCTATGGAGCTCATTGATAAGGCCACAGAAGAGGGGGATGCACCAAAGGTGGTGGTCATGACCAGCGTGCTCGAGGAGTACACTGAGGCCGGCAAGGCCACGGAGGCTCTGCATTTGTACCAAAAGATGTTAGATTCTGAAGATTGTGTCCCCAATGCTTACACTTACAATGTACTCATCAAGGCACTGGCTGCAGACCCGGACCCCAATTTTCTCGGGGTTGCCAAGGAATGTGTCATGGAAATGATGGGGAAGAAAATGCAGCCCAGTGCCAGCACATACATGGCTGTGTTTGAGGCGTATGCAGGACACGAGAAGACGGAGGAGGCCAAGCAGTTTCTGGAGGAGATGAAAATCAATGGGTTTGTGGCTGACAGGAAGGCAATGAGGGCCATCAGGCAGCTTCTCAACGGCAAAGAACATATGCTCACAAGCATCATGGACATTCTATTTGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

201

Amino Acids

22.7

Weight (kDa)

5.34

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	63 - 112	2.7e-11	PPR repeat family
PPR_long	PF17177	72 - 169	7e-07	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	224, 263, 318
AfiI	CCNNNNNNNGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	154, 547
AluI	AGCT	2 cut(s)	154, 547
Alw21I	GWGCWC	2 cut(s)	156, 216
Alw26I	GTCTC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	2 cut(s)	215, 359
AoxI	GGCC	5 cut(s)	165, 231, 240, 471, 534
ApeKI	GCWGC	3 cut(s)	335, 406, 544
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	1 cut(s)	578
AspS9I	GGNCC	2 cut(s)	346, 534
AsuC2I	CCSGG	1 cut(s)	344
AvaI	CYCGRG	2 cut(s)	215, 359
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	156, 216
BbvI	GCAGC	3 cut(s)	322, 418, 556
BccI	CCATC	2 cut(s)	385, 545
BceAI	ACGGC	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	336
BglI	GCCNNNNNGGC	2 cut(s)	239, 248
BisI	GCNGC	3 cut(s)	336, 407, 545
BlsI	GCNGC	3 cut(s)	337, 408, 546
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	2 cut(s)	215, 359
BmgT120I	GGNCC	2 cut(s)	346, 534
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	172, 588
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	2 cut(s)	74, 506
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	243, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	336, 411
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	243, 369
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	27, 219
BseNI	ACTGG	2 cut(s)	336, 411
BseRI	GAGGAG	4 cut(s)	42, 233, 482, 503
BseXI	GCAGC	3 cut(s)	322, 418, 556
BshFI	GGCC	5 cut(s)	167, 233, 242, 473, 536
BsiHKAI	GWGCWC	2 cut(s)	156, 216
BsiHKCI	CYCGRG	2 cut(s)	215, 359
BsiSI	CCGG	2 cut(s)	234, 344
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	167, 233, 242, 473, 536
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	2 cut(s)	215, 359
Bsp1286I	GDGCHC	2 cut(s)	156, 216
BspANI	GGCC	5 cut(s)	167, 233, 242, 473, 536
BspCNI	CTCAG	2 cut(s)	28, 220
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	336, 411
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	243, 369
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	212, 235, 418
BstDEI	CTNAG	2 cut(s)	36, 228
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 248, 335, 533
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	322, 418, 556
BstV2I	GAAGAC	1 cut(s)	467
BsuRI	GGCC	5 cut(s)	167, 233, 242, 473, 536
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	225, 329, 418
Cac8I	GCNNGC	3 cut(s)	212, 235, 418
CaiI	CAGNNNCTG	1 cut(s)	484
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	346, 534
Csp6I	GTAC	3 cut(s)	223, 262, 317
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	4 cut(s)	202, 382, 427, 583
CviQI	GTAC	3 cut(s)	223, 262, 317
DdeI	CTNAG	2 cut(s)	36, 228
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	215, 359
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	205, 385, 430, 586
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	201, 381, 426, 582
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	336, 407, 545
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	336, 407, 545
GluI	GCNGC	3 cut(s)	336, 407, 545
GsuI	CTGGAG	2 cut(s)	74, 506
HaeIII	GGCC	5 cut(s)	167, 233, 242, 473, 536
HapII	CCGG	2 cut(s)	234, 344
Hin1II	CATG	4 cut(s)	205, 385, 430, 586
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	234, 344
Hpy166II	GTNNAC	2 cut(s)	13, 225
Hpy188I	TCNGA	2 cut(s)	127, 283
Hpy188III	TCNNGA	3 cut(s)	91, 202, 485
Hpy8I	GTNNAC	2 cut(s)	13, 225
HpyAV	CCTTC	2 cut(s)	75, 517
HpyCH4V	TGCA	5 cut(s)	185, 256, 338, 406, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 248, 335, 533
HpyF3I	CTNAG	2 cut(s)	36, 228
Hsp92II	CATG	4 cut(s)	205, 385, 430, 586
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	3 cut(s)	322, 418, 556
LweI	GCATC	2 cut(s)	172, 588
MboII	GAAGA	4 cut(s)	185, 296, 409, 472
MhlI	GDGCHC	2 cut(s)	156, 216
MluCI	AATT	3 cut(s)	40, 115, 352
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	3 cut(s)	386, 425, 431
MspI	CCGG	2 cut(s)	234, 344
MspR9I	CCNGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	239, 248, 335, 533
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	567
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	4 cut(s)	205, 385, 430, 586
NlaIV	GGNNCC	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	337, 408, 546
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	346, 534
PspXI	VCTCGAGB	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	3 cut(s)	224, 263, 318
RsaNI	GTAC	3 cut(s)	223, 262, 317
RseI	CAYNNNNRTG	3 cut(s)	386, 425, 431
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	336, 407, 545
Sau96I	GGNCC	2 cut(s)	346, 534
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	156, 216
SetI	ASST	5 cut(s)	12, 86, 156, 195, 549
SfaNI	GCATC	2 cut(s)	172, 588
SfcI	CTRYAG	1 cut(s)	336
SfiI	GGCCNNNNNGGCC	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	3 cut(s)	386, 425, 431
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	40, 115, 352
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	40, 115, 352
TatI	WGTACW	2 cut(s)	222, 316
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	232, 336, 418
TseI	GCWGC	3 cut(s)	335, 406, 544
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	2 cut(s)	260, 479
TspRI	CASTG	3 cut(s)	232, 336, 418
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 481
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.