Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

13827248 .. 13827893

Gene Structure 646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCTAGAGTTGGCGGCCATATGATGTTCAAGGCCAATTCAGTGTTGAAGCTGTTATACTCAGACTATACATATCTTTATCCGCTCCTTTCCAAGTCACTCTTCTGTGTGGTGGAGCCTCTGGATTATATGCCTGACACTGAAAGCGTGCTGATCCAGATGTTGGAGGACCTATTTCCTAACTCAAAGACACATGTTATTTCAATTCAAACTACTGTGATCAGAATTATCAATTTCACTGATGCTGGAGCTGCGGAGAGAGCGGCAAGGGACTATCCTTTTGGGATACGGCTAGCAGACCCGAAGAATGAGAATCAGTTTATTGAGGCACTGTTTTATAGGCCTAACTTAGAATTACTTCATAATTTCATGCTACTAGAGCAGGGCTCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

5.47

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	2 cut(s)	85, 263
AciI	CCGC	4 cut(s)	15, 83, 254, 263
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	11, 163
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	31, 49, 204, 209
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	52, 251
AluI	AGCT	2 cut(s)	52, 251
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	16, 33, 341
ApeKI	GCWGC	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	219
BfaI	CTAG	3 cut(s)	6, 293, 377
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	16, 252, 264
BlsI	GCNGC	3 cut(s)	17, 253, 265
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	117, 388
BmsI	GCATC	1 cut(s)	232
BmtI	GCTAGC	1 cut(s)	296
BplI	GAGNNNNNCTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 163
BseLI	CCNNNNNNNGG	2 cut(s)	11, 163
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	3 cut(s)	18, 35, 343
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	11, 163
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	18, 35, 343
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	153, 219
BspACI	CCGC	4 cut(s)	15, 83, 254, 263
BspANI	GGCC	3 cut(s)	18, 35, 343
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	117, 388
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	148
BsrBI	CCGCTC	2 cut(s)	85, 263
BssMI	GATC	2 cut(s)	153, 219
Bst4CI	ACNGT	2 cut(s)	217, 333
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	149, 294
BstDEI	CTNAG	2 cut(s)	61, 349
BstKTI	GATC	2 cut(s)	156, 222
BstMBI	GATC	2 cut(s)	153, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 260, 379
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	18, 35, 343
BtsIMutI	CAGTG	5 cut(s)	48, 138, 237, 329, 391
Cac8I	GCNNGC	2 cut(s)	149, 294
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	2 cut(s)	194, 370
CviJI	RGCY	8 cut(s)	18, 35, 52, 118, 251, 292, 343, 387
CviKI_1	RGCY	8 cut(s)	18, 35, 52, 118, 251, 292, 343, 387
DdeI	CTNAG	2 cut(s)	61, 349
DpnI	GATC	2 cut(s)	155, 221
DpnII	GATC	2 cut(s)	153, 219
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	2 cut(s)	197, 373
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	193, 369
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	16, 252, 264
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	16, 252, 264
FspBI	CTAG	3 cut(s)	6, 293, 377
GluI	GCNGC	3 cut(s)	16, 252, 264
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	18, 35, 343
Hin1II	CATG	2 cut(s)	197, 373
HinfI	GANTC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	64, 224
Hpy188III	TCNNGA	2 cut(s)	122, 157
HpyCH4III	ACNGT	2 cut(s)	217, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 260, 379
HpyF3I	CTNAG	2 cut(s)	61, 349
Hsp92II	CATG	2 cut(s)	197, 373
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	153, 219
LmnI	GCTCC	4 cut(s)	90, 115, 248, 392
LpnPI	CCDG	5 cut(s)	107, 147, 170, 231, 368
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	6, 293, 377
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	155, 221
MbiI	CCGCTC	2 cut(s)	85, 263
MboI	GATC	2 cut(s)	153, 219
MboII	GAAGA	2 cut(s)	94, 316
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	6 cut(s)	37, 204, 225, 232, 353, 364
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	129, 160, 319
MroXI	GAANNNNTTC	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	251, 260, 379
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	2 cut(s)	153, 219
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	197, 373
NlaIV	GGNNCC	2 cut(s)	117, 388
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	343
PciI	ACATGT	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	17, 253, 265
PpuMI	RGGWCCY	1 cut(s)	169
PscI	ACATGT	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	117, 388
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
SatI	GCNGC	3 cut(s)	16, 252, 264
Sau3AI	GATC	2 cut(s)	153, 219
Sau96I	GGNCC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	3 cut(s)	54, 174, 253
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	6 cut(s)	37, 204, 225, 232, 353, 364
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	4 cut(s)	15, 83, 254, 263
SspMI	CTAG	3 cut(s)	6, 293, 377
StuI	AGGCCT	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	217, 333
TasI	AATT	6 cut(s)	37, 204, 225, 232, 353, 364
TauI	GCSGC	2 cut(s)	18, 266
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	4 cut(s)	48, 145, 244, 336
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	2 cut(s)	350, 358
TspRI	CASTG	4 cut(s)	48, 145, 244, 336
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	3 cut(s)	6, 293, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.