Rh5CG111000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006937
Physical Location & Seq
Forward (+)
9129029 .. 9131401
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG111000.1

Sequence Viewer

Length: 483 bp
ATGGCATTTATTGCTCCAAACGCAATATACTTGGTTAGTGATCAGAGGCAAGTTACAGCTGACCAACGGCAAACTACCTATGTAGTGAATGATGCATGGAAAAAGTTGTATGACATTGACAATGATATCCTTGCCACAGCGGGCACAACTACTATAGCATTTATTGGTGCAAAGGCAATTGACTTGGCTACTCAAAGGGCCATAGTTGTTGCTTCGGTTAAGGAAAAGTCCACCGGCGGCCGTGTGCGGAGAGCTGAAATTCAGATATGCGGCAATCAAGTAGCCGTTTTTTGGGATCCCCCATTGTCAGTGCTGCAATTATTAGAGAGGGATTTGAATCGATATAGGCGGCACCTTGAGAATTCTTTCTTCTTTGTGTGTCATGGTTTTCCCTACAACGAAGAGTTTGAACCAATACTTTTACAAGCTCTTGCAGGGCGATTCCCAAACTCGCGCATCCACGTCATTTCTCGACGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.17

Weight (kDa)

9.03

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 351
AccII CGCG 1 cut(s) 454
AciI CCGC 5 cut(s) 140, 237, 247, 270, 349
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 2 cut(s) 258, 361
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 2 cut(s) 337, 410
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 3 cut(s) 59, 254, 428
AluI AGCT 3 cut(s) 59, 254, 428
AlwI GGATC 2 cut(s) 290, 303
AoxI GGCC 2 cut(s) 198, 238
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 2 cut(s) 258, 361
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 146
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 300
BceAI ACGGC 3 cut(s) 83, 225, 269
BclI TGATCA 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 4 cut(s) 238, 271, 314, 350
BlsI GCNGC 4 cut(s) 239, 272, 315, 351
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 297, 353
BmsI GCATC 2 cut(s) 82, 465
BpuEI CTTGAG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 340
BseGI GGATG 1 cut(s) 456
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 2 cut(s) 200, 240
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 291
BsnI GGCC 2 cut(s) 200, 240
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 40, 295
BspACI CCGC 5 cut(s) 140, 237, 247, 270, 349
BspANI GGCC 2 cut(s) 200, 240
BspDI ATCGAT 1 cut(s) 340
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 297, 353
BspPI GGATC 2 cut(s) 290, 303
BspT107I GGYRCC 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 2 cut(s) 40, 295
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 43, 298
BstMBI GATC 2 cut(s) 40, 295
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BstZI CGGCCG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 340
BsuRI GGCC 2 cut(s) 200, 240
BsuTUI ATCGAT 1 cut(s) 340
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 340
CviAII CATG 2 cut(s) 96, 383
CviJI RGCY 7 cut(s) 59, 188, 200, 240, 254, 284, 428
CviKI_1 RGCY 7 cut(s) 59, 188, 200, 240, 254, 284, 428
DpnI GATC 2 cut(s) 42, 297
DpnII GATC 2 cut(s) 40, 295
EaeI YGGCCR 1 cut(s) 238
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EclXI CGGCCG 1 cut(s) 238
Eco32I GATATC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 361
EcoRV GATATC 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 2 cut(s) 99, 386
FaiI YATR 9 cut(s) 28, 81, 97, 111, 155, 203, 268, 345, 384
FatI CATG 2 cut(s) 95, 382
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 238, 271, 314, 350
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 4 cut(s) 238, 271, 314, 350
GlaI GCGC 1 cut(s) 455
GluI GCNGC 4 cut(s) 238, 271, 314, 350
HaeIII GGCC 2 cut(s) 200, 240
HapII CCGG 1 cut(s) 234
HhaI GCGC 1 cut(s) 456
Hin1II CATG 2 cut(s) 99, 386
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 2 cut(s) 337, 441
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 45, 264
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 95, 170, 316, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 99, 386
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 295
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 247, 420
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 82, 465
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 42, 297
MboI GATC 2 cut(s) 40, 295
MboII GAAGA 2 cut(s) 361, 413
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 5 cut(s) 177, 258, 317, 361, 478
MnlI CCTC 2 cut(s) 39, 321
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 59, 140
MspI CCGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 177
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 40, 295
NlaIII CATG 2 cut(s) 99, 386
NlaIV GGNNCC 2 cut(s) 297, 353
NsiI ATGCAT 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 337, 441
PkrI GCNGC 4 cut(s) 239, 272, 315, 351
PspN4I GGNNCC 2 cut(s) 297, 353
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 238, 271, 314, 350
Sau3AI GATC 2 cut(s) 40, 295
Sau96I GGNCC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 61, 80, 256, 357, 430, 465
SfaNI GCATC 2 cut(s) 82, 465
SfcI CTRYAG 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 177, 258, 317, 361, 478
SsiI CCGC 5 cut(s) 140, 237, 247, 270, 349
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 340, 472
TasI AATT 5 cut(s) 177, 258, 317, 361, 478
TauI GCSGC 3 cut(s) 240, 273, 352
TfiI GAWTC 2 cut(s) 337, 441
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 313
TspRI CASTG 1 cut(s) 315
XapI RAATTY 2 cut(s) 258, 361
XmnI GAANNNNTTC 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.