Rmu_sc0012092.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012092.1
OG0006937
Physical Location & Seq
Forward (+)
9397 .. 9896
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012092.1_g000004.1.cds

Sequence Viewer

Length: 450 bp
atgttctataatttattatcagacggctacaaggacttggctatggagctcattgataaggctacagaagagggtgaagcaccgaaggtagtggtcatgaccagcatgcttgaggagtacactaaggccggcaaggcgacggaggctctgcatttgtaccaaaagatgttagattccgaagattgtgctcccaatgtttacacttacaatgtccttatcaaggcactggctgcagacccggaccccaatttctcgggtgccaacacatacacgtatgtgtttgaggcgtattcagggcaagcgaagatggaggaggccaagcagtttctggaggagatgaaaatcaatgggtttgtggctgacaggaaggcaatgagggccattaggcagcttctcaagggtaaaggacatatgctcacaagcatcatggatattctattttgtaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.79

Weight (kDa)

5.08

Isoelectric Point (pI)

23.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AfaI GTAC 2 cut(s) 119, 158
AfiI CCNNNNNNNGG 1 cut(s) 220
AflIII ACRYGT 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 49, 391
AluI AGCT 2 cut(s) 49, 391
Alw21I GWGCWC 2 cut(s) 51, 190
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 126, 315, 378
ApeKI GCWGC 2 cut(s) 230, 388
AspS9I GGNCC 2 cut(s) 241, 378
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 51, 190
BbvI GCAGC 2 cut(s) 217, 400
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 1 cut(s) 239
BfmI CTRYAG 2 cut(s) 63, 231
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 2 cut(s) 231, 389
BlsI GCNGC 2 cut(s) 232, 390
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 241, 378
BmiI GGNNCC 2 cut(s) 243, 259
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 131, 380
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 341
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 128, 326, 347
BseXI GCAGC 2 cut(s) 217, 400
BshFI GGCC 3 cut(s) 128, 317, 380
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 51, 190
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 129, 239
BslI CCNNNNNNNGG 1 cut(s) 220
BsnI GGCC 3 cut(s) 128, 317, 380
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 51, 190
BspANI GGCC 3 cut(s) 128, 317, 380
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 243, 259
BspMAI CTGCAG 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 107, 130, 300
BstDEI CTNAG 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 218
BstMWI GCNNNNNNNGC 4 cut(s) 134, 143, 230, 377
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 2 cut(s) 63, 231
BstV1I GCAGC 2 cut(s) 217, 400
BsuRI GGCC 3 cut(s) 128, 317, 380
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 107, 130, 300
CaiI CAGNNNCTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 241, 378
Csp6I GTAC 2 cut(s) 118, 157
CviAII CATG 3 cut(s) 97, 106, 427
CviQI GTAC 2 cut(s) 118, 157
DdeI CTNAG 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 3 cut(s) 100, 109, 430
FaiI YATR 9 cut(s) 9, 44, 98, 107, 268, 276, 411, 413, 428
FatI CATG 3 cut(s) 96, 105, 426
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 231, 389
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 231, 389
GluI GCNGC 2 cut(s) 231, 389
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 3 cut(s) 128, 317, 380
HapII CCGG 2 cut(s) 129, 239
Hin1II CATG 3 cut(s) 100, 109, 430
HinfI GANTC 1 cut(s) 173
HpaII CCGG 2 cut(s) 129, 239
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 120, 199
Hpy188I TCNGA 2 cut(s) 22, 178
Hpy188III TCNNGA 2 cut(s) 97, 329
Hpy8I GTNNAC 2 cut(s) 120, 199
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 79, 361
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 151, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 143, 230, 377
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 3 cut(s) 100, 109, 430
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 46, 193
LpnPI CCDG 7 cut(s) 115, 142, 212, 252, 279, 314, 349
Lsp1109I GCAGC 2 cut(s) 217, 400
LweI GCATC 1 cut(s) 432
MaeII ACGT 1 cut(s) 272
MboII GAAGA 3 cut(s) 80, 191, 316
MhlI GDGCHC 2 cut(s) 51, 190
MluCI AATT 2 cut(s) 10, 247
MnlI CCTC 8 cut(s) 64, 106, 136, 277, 304, 307, 325, 369
MroNI GCCGGC 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 2 cut(s) 129, 239
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 134, 143, 230, 377
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 411
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 100, 109, 430
NlaIV GGNNCC 2 cut(s) 243, 259
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 275
PaeI GCATGC 1 cut(s) 109
PagI TCATGA 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 232, 390
Ppu21I YACGTR 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 243, 259
PspPI GGNCC 2 cut(s) 241, 378
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 328
RsaI GTAC 2 cut(s) 119, 158
RsaNI GTAC 2 cut(s) 118, 157
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 51
SatI GCNGC 2 cut(s) 231, 389
Sau96I GGNCC 2 cut(s) 241, 378
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 51, 190
SetI ASST 4 cut(s) 51, 90, 275, 393
SfaNI GCATC 1 cut(s) 432
SfcI CTRYAG 2 cut(s) 63, 231
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 110, 395
SmoI CTYRAG 2 cut(s) 110, 395
SphI GCATGC 1 cut(s) 109
Sse9I AATT 2 cut(s) 10, 247
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 275
TasI AATT 2 cut(s) 10, 247
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 230, 388
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 218
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.