Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

42079201 .. 42081177

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCAAGTACAAGCTCCTCCCGAAATATCAAGGCTACCATCGAGGTTAACAGCCCTAATGTGACTAATGTGGTGTTTTTTGACAGACCAATTCCTCATGTATGCAAACCTGGTGAAGAGACCATAATCGACGGGTACAATGACTTGGCTACGGAGATTGTGAATAAGGTTACGGAAGAGCGTGACATTCCCAAGGTGGTTATTGCTACTGGCATTATTGAAGAGTACACCGATGCCGGCAAGACCAAGGAGGCTCTCCATGTGTTTCGGATTTTTTCGGATTCGGAACATTGCAACCCTTACACTTATAGTGTTATCATCAAGGCACTGGTTGCCGACTCGGACCCTAGTTTTCTTGAGGTTGCCAAGGAGTGTCTCATGGAGATGACGGGCAAGGGACTGCAGCCCAGTGCCAGGCGTTTTCTCGGCAAGAGAAAATGGAGGAGGCCAAGCAGTTTCTTGGGTGGGGAGATGAAAGCCAAGGGGTTTGTGGCTGACAACAAGGCAATGAGGGCTATGAGACTGGTTCTTAAGGGCAAAGGAGCTGTGATCAAAAGCATCACCGACATTCTCTTCTCAGATGAGTTAGAAGACTACTCAGACGACTCAGATGATGATGATGAAATGCAGAACTACAACGAAAAGATGGAATCGAGTGACAACACACCGGCGTCATGGGGATCTATGCCAAGGCCGATGAGGTCAAGGAGGTTCTCAAAGTGTTCATGCGCATGCTATCTCTTGGAGTCGCTCCCAATGCATACACTTATAGTGTTCTCATTAAGGCACTTGCCAAAGATCCCAATTTTGTTGGTGATGTATGTCAAGATGTACACTCTAGAAATGATGGACAAGGGAATGCGGCCGAATGCTAGGACCTACACCGCCGTGTTCAAGGCCTTTGCCCGGCTGAAGGATTTCAAGTTGGAGAAGGGCAAAGAGTTTCTGAAGGAGATGAAAGAAAGGGGGTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

326

Amino Acids

36.89

Weight (kDa)

8.38

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	730
AciI	CCGC	2 cut(s)	862, 885
AclWI	GGATC	2 cut(s)	688, 793
AcoI	YGGCCR	1 cut(s)	863
AcuI	CTGAAG	2 cut(s)	932, 968
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	4 cut(s)	10, 137, 227, 833
AfiI	CCNNNNNNNGG	3 cut(s)	414, 906, 913
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	221, 895, 922
AjnI	CCWGG	2 cut(s)	109, 413
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	2 cut(s)	15, 545
AluI	AGCT	2 cut(s)	15, 545
Alw26I	GTCTC	3 cut(s)	113, 380, 514
AlwI	GGATC	2 cut(s)	688, 793
AoxI	GGCC	4 cut(s)	446, 692, 863, 897
ApeKI	GCWGC	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	343, 876
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	3 cut(s)	125, 553, 826
AvaII	GGWCC	2 cut(s)	343, 876
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	47, 640, 841
BceAI	ACGGC	1 cut(s)	872
BciT130I	CCWGG	2 cut(s)	111, 415
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	3 cut(s)	113, 380, 514
BfaI	CTAG	3 cut(s)	348, 839, 873
BfmI	CTRYAG	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	404, 863
BlsI	GCNGC	2 cut(s)	405, 864
Bme1390I	CCNGG	3 cut(s)	111, 415, 907
Bme18I	GGWCC	2 cut(s)	343, 876
BmgT120I	GGNCC	2 cut(s)	343, 876
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	111, 415, 907
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	223, 567
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	907
BsaHI	GRCGYC	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	5 cut(s)	192, 246, 366, 480, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 906, 913
Bse118I	RCCGGY	2 cut(s)	236, 667
Bse1I	ACTGG	4 cut(s)	214, 333, 408, 528
Bse3DI	GCAATG	2 cut(s)	289, 513
BseBI	CCWGG	2 cut(s)	111, 415
BseDI	CCNNGG	5 cut(s)	192, 246, 366, 480, 689
BseLI	CCNNNNNNNGG	3 cut(s)	414, 906, 913
BseMI	GCAATG	2 cut(s)	289, 513
BseMII	CTCAG	3 cut(s)	591, 612, 621
BseNI	ACTGG	4 cut(s)	214, 333, 408, 528
BseRI	GAGGAG	2 cut(s)	7, 457
BseX3I	CGGCCG	1 cut(s)	863
BseXI	GCAGC	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	866
BshFI	GGCC	4 cut(s)	448, 694, 865, 899
BsiEI	CGRYCG	1 cut(s)	866
BsiSI	CCGG	3 cut(s)	237, 668, 907
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	3 cut(s)	414, 906, 913
BsmAI	GTCTC	3 cut(s)	113, 380, 514
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	2 cut(s)	864, 874
BsnI	GGCC	4 cut(s)	448, 694, 865, 899
Bso31I	GGTCTC	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	3 cut(s)	549, 680, 798
BspACI	CCGC	2 cut(s)	862, 885
BspANI	GGCC	4 cut(s)	448, 694, 865, 899
BspCNI	CTCAG	3 cut(s)	590, 611, 620
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	2 cut(s)	688, 793
BspQI	GCTCTTC	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	289, 513
BsrFI	RCCGGY	2 cut(s)	236, 667
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	4 cut(s)	214, 333, 408, 528
BssAI	RCCGGY	2 cut(s)	236, 667
BssECI	CCNNGG	5 cut(s)	192, 246, 366, 480, 689
BssMI	GATC	3 cut(s)	549, 680, 798
BssNI	GRCGYC	1 cut(s)	671
BssT1I	CCWWGG	5 cut(s)	192, 246, 366, 480, 689
Bst2UI	CCWGG	2 cut(s)	111, 415
Bst6I	CTCTTC	4 cut(s)	111, 171, 216, 578
BstACI	GRCGYC	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	238, 733
BstDEI	CTNAG	3 cut(s)	577, 598, 607
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	3 cut(s)	552, 683, 801
BstMAI	GTCTC	3 cut(s)	113, 380, 514
BstMBI	GATC	3 cut(s)	549, 680, 798
BstMCI	CGRYCG	1 cut(s)	866
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 512, 757
BstNI	CCWGG	2 cut(s)	111, 415
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	3 cut(s)	109, 413, 905
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	680, 798
BstYI	RGATCY	2 cut(s)	680, 798
BstZI	CGGCCG	1 cut(s)	863
BsuRI	GGCC	4 cut(s)	448, 694, 865, 899
BtsIMutI	CAGTG	2 cut(s)	326, 415
Cac8I	GCNNGC	2 cut(s)	238, 733
CfoI	GCGC	1 cut(s)	731
Cfr10I	RCCGGY	2 cut(s)	236, 667
Cfr13I	GGNCC	2 cut(s)	343, 876
CseI	GACGC	1 cut(s)	660
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	9, 136, 226, 832
CviAII	CATG	6 cut(s)	98, 260, 379, 675, 726, 732
CviQI	GTAC	4 cut(s)	9, 136, 226, 832
DdeI	CTNAG	3 cut(s)	577, 598, 607
DpnI	GATC	3 cut(s)	551, 682, 800
DpnII	GATC	3 cut(s)	549, 680, 798
EaeI	YGGCCR	1 cut(s)	863
EagI	CGGCCG	1 cut(s)	863
Eam1104I	CTCTTC	4 cut(s)	111, 171, 216, 578
EarI	CTCTTC	4 cut(s)	111, 171, 216, 578
EclXI	CGGCCG	1 cut(s)	863
Eco130I	CCWWGG	5 cut(s)	192, 246, 366, 480, 689
Eco147I	AGGCCT	1 cut(s)	899
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	343, 876
Eco52I	CGGCCG	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	932, 968
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	109, 413
EcoT14I	CCWWGG	5 cut(s)	192, 246, 366, 480, 689
EcoT22I	ATGCAT	1 cut(s)	762
ErhI	CCWWGG	5 cut(s)	192, 246, 366, 480, 689
FaeI	CATG	6 cut(s)	101, 263, 382, 678, 729, 735
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	6 cut(s)	97, 259, 378, 674, 725, 731
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	404, 863
Fsp4HI	GCNGC	2 cut(s)	404, 863
FspAI	RTGCGCAY	1 cut(s)	730
FspBI	CTAG	3 cut(s)	348, 839, 873
FspI	TGCGCA	1 cut(s)	730
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	2 cut(s)	404, 863
HaeIII	GGCC	4 cut(s)	448, 694, 865, 899
HapII	CCGG	3 cut(s)	237, 668, 907
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	1 cut(s)	731
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	6 cut(s)	101, 263, 382, 678, 729, 735
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	281, 338, 605, 650, 746
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	237, 668, 907
HphI	GGTGA	3 cut(s)	125, 553, 826
Hpy166II	GTNNAC	3 cut(s)	49, 228, 834
Hpy188I	TCNGA	8 cut(s)	270, 280, 286, 343, 580, 601, 610, 948
Hpy188III	TCNNGA	4 cut(s)	21, 356, 826, 839
Hpy8I	GTNNAC	3 cut(s)	49, 228, 834
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	907, 925, 943
HpyCH4V	TGCA	5 cut(s)	105, 294, 403, 628, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 512, 757
HpyF3I	CTNAG	3 cut(s)	577, 598, 607
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	6 cut(s)	101, 263, 382, 678, 729, 735
HspAI	GCGC	1 cut(s)	729
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	549, 680, 798
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	20, 542, 756
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	223, 567
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	3 cut(s)	348, 839, 873
MaeIII	GTNAC	4 cut(s)	61, 169, 182, 656
MalI	GATC	3 cut(s)	551, 682, 800
MboI	GATC	3 cut(s)	549, 680, 798
MboII	GAAGA	5 cut(s)	128, 188, 233, 565, 602
MflI	RGATCY	2 cut(s)	680, 798
MluCI	AATT	3 cut(s)	90, 804, 972
MlyI	GAGTC	3 cut(s)	332, 599, 755
MmeI	TCCRAC	1 cut(s)	906
Mph1103I	ATGCAT	1 cut(s)	762
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	4 cut(s)	48, 531, 782, 971
MslI	CAYNNNNRTG	3 cut(s)	383, 730, 887
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	3 cut(s)	237, 668, 907
MspR9I	CCNGG	3 cut(s)	111, 415, 907
Mva1269I	GAATGC	2 cut(s)	864, 874
MvaI	CCWGG	2 cut(s)	111, 415
MwoI	GCNNNNNNNGC	3 cut(s)	332, 512, 757
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	907
NdeII	GATC	3 cut(s)	549, 680, 798
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	101, 263, 382, 678, 729, 735
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	3 cut(s)	61, 182, 656
NsbI	TGCGCA	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	1 cut(s)	735
OliI	CACNNNNGTG	1 cut(s)	887
PaeI	GCATGC	1 cut(s)	735
PceI	AGGCCT	1 cut(s)	899
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	2 cut(s)	864, 874
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	281, 650
PkrI	GCNGC	2 cut(s)	405, 864
PleI	GAGTC	3 cut(s)	332, 599, 754
PpsI	GAGTC	3 cut(s)	332, 599, 754
PpuMI	RGGWCCY	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	876
Psp6I	CCWGG	2 cut(s)	109, 413
PspGI	CCWGG	2 cut(s)	109, 413
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	343, 876
PspPPI	RGGWCCY	1 cut(s)	876
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	2 cut(s)	680, 798
RsaI	GTAC	4 cut(s)	10, 137, 227, 833
RsaNI	GTAC	4 cut(s)	9, 136, 226, 832
RseI	CAYNNNNRTG	3 cut(s)	383, 730, 887
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	48, 531, 782, 971
SatI	GCNGC	2 cut(s)	404, 863
Sau3AI	GATC	3 cut(s)	549, 680, 798
Sau96I	GGNCC	2 cut(s)	343, 876
SchI	GAGTC	3 cut(s)	332, 599, 755
ScrFI	CCNGG	3 cut(s)	111, 415, 907
SexAI	ACCWGGT	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	223, 567
SfcI	CTRYAG	1 cut(s)	401
SgrAI	CRCCGGYG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	343, 876
SmiMI	CAYNNNNRTG	3 cut(s)	383, 730, 887
SmlI	CTYRAG	2 cut(s)	356, 530
SmoI	CTYRAG	2 cut(s)	356, 530
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	3 cut(s)	90, 804, 972
SseBI	AGGCCT	1 cut(s)	899
SsiI	CCGC	2 cut(s)	862, 885
SspMI	CTAG	3 cut(s)	348, 839, 873
StuI	AGGCCT	1 cut(s)	899
StyD4I	CCNGG	3 cut(s)	109, 413, 905
StyI	CCWWGG	5 cut(s)	192, 246, 366, 480, 689
TaqI	TCGA	3 cut(s)	42, 129, 653
TasI	AATT	3 cut(s)	90, 804, 972
TatI	WGTACW	3 cut(s)	8, 225, 831
TauI	GCSGC	1 cut(s)	865
TfiI	GAWTC	2 cut(s)	281, 650
Tru1I	TTAA	4 cut(s)	48, 531, 782, 971
Tru9I	TTAA	4 cut(s)	48, 531, 782, 971
TscAI	CASTG	2 cut(s)	333, 415
TseFI	GTSAC	3 cut(s)	61, 182, 656
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	3 cut(s)	61, 182, 656
TspDTI	ATGAA	4 cut(s)	488, 636, 714, 971
TspGWI	ACGGA	2 cut(s)	167, 188
TspRI	CASTG	2 cut(s)	333, 415
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	343, 876
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	1 cut(s)	735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	3 cut(s)	348, 839, 873
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.