Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012092.1

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

13464 .. 14809

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012092.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggaataattggtgccacggctgtctttctcgctgctgatcagggtggtactattgacaaacaatatgtagtggttgataattactgcaagttctataacattgggcaaacgatcttggtgactatggcaggagatgcagcattgtgtgaggaaatgttaaacacagcaaaaaaggtggtcaacacagcttttctccctgctgaatttgaacgcattcaccttgtaacccttactgcaatggcttttattaataattgggaaatttgtaatcccggtaaagcatgtaaagaagagaccctaatttctagttggcacaacactaaggctatactatattcggttggaattaaccgaccagaaggaggtgttataagatgtataacgctccctggaattgtcgccacatcaggaaacagtgctgctgcactacaaactgcccacattggcggccatgtccaaatgggtaaagttccaagagatggtccttacatcttagattgtgctttctcagtgctagagatagtgcacctcttttacgaagaattcaagcccgtcatgtcagatggcctttttatggtggctgaaaatttaaaagtatacccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.92

Weight (kDa)

5.49

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	4 cut(s)	206, 264, 545, 589
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	3 cut(s)	365, 482, 577
AgsI	TTSAA	2 cut(s)	212, 550
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	527
AoxI	GGCC	2 cut(s)	451, 568
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	4 cut(s)	35, 140, 422, 425
ApoI	RAATTY	4 cut(s)	206, 264, 545, 589
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	133, 212
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	22, 152, 409, 412
BccI	CCATC	2 cut(s)	476, 560
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	309, 518
BisI	GCNGC	5 cut(s)	36, 141, 423, 426, 451
BlsI	GCNGC	5 cut(s)	37, 142, 424, 427, 452
Bme1390I	CCNGG	2 cut(s)	276, 393
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	276, 393
BmsI	GCATC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	18, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 482, 577
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	18, 391
BseLI	CCNNNNNNNGG	3 cut(s)	365, 482, 577
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	525
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	4 cut(s)	22, 152, 409, 412
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	453, 570
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	365, 482, 577
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	453, 570
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	40, 114
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	2 cut(s)	453, 570
BspCNI	CTCAG	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	18, 391
BssMI	GATC	2 cut(s)	40, 114
BssNAI	GTATAC	1 cut(s)	601
Bst1107I	GTATAC	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	324, 496, 511
BstDSI	CCRYGG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	43, 117
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	40, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	274, 391
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	22, 152, 409, 412
BstZ17I	GTATAC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	453, 570
BtgI	CCRYGG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	424, 519
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	51
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	3 cut(s)	285, 455, 559
CviJI	RGCY	8 cut(s)	23, 191, 245, 329, 453, 553, 570, 584
CviKI_1	RGCY	8 cut(s)	23, 191, 245, 329, 453, 553, 570, 584
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	324, 496, 511
DpnI	GATC	2 cut(s)	42, 116
DpnII	GATC	2 cut(s)	40, 114
DraI	TTTAAA	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	288, 458, 562
FatI	CATG	3 cut(s)	284, 454, 558
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	5 cut(s)	36, 141, 423, 426, 451
Fsp4HI	GCNGC	5 cut(s)	36, 141, 423, 426, 451
FspBI	CTAG	2 cut(s)	309, 518
GluI	GCNGC	5 cut(s)	36, 141, 423, 426, 451
HaeIII	GGCC	2 cut(s)	453, 570
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	3 cut(s)	288, 458, 562
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	133, 212
Hpy166II	GTNNAC	3 cut(s)	184, 529, 601
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	3 cut(s)	184, 529, 601
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	90, 140, 239, 428, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	324, 496, 511
Hsp92II	CATG	3 cut(s)	288, 458, 562
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 114
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	8 cut(s)	29, 117, 213, 289, 372, 378, 396, 405
Lsp1109I	GCAGC	4 cut(s)	22, 152, 409, 412
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	309, 518
MaeIII	GTNAC	2 cut(s)	121, 226
MalI	GATC	2 cut(s)	42, 116
MboI	GATC	2 cut(s)	40, 114
MboII	GAAGA	2 cut(s)	305, 554
MhlI	GDGCHC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	3 cut(s)	145, 359, 542
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	4 cut(s)	161, 252, 351, 593
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	276, 393
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	40, 114
NlaIII	CATG	3 cut(s)	288, 458, 562
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	288
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	216
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	37, 142, 424, 427, 452
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	161, 252, 351, 593
SatI	GCNGC	5 cut(s)	36, 141, 423, 426, 451
Sau3AI	GATC	2 cut(s)	40, 114
Sau96I	GGNCC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	276, 393
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	5 cut(s)	180, 193, 225, 370, 534
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	485
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	309, 518
StyD4I	CCNGG	2 cut(s)	274, 391
TaaI	ACNGT	1 cut(s)	419
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	4 cut(s)	161, 252, 351, 593
Tru9I	TTAA	4 cut(s)	161, 252, 351, 593
TscAI	CASTG	2 cut(s)	424, 519
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	4 cut(s)	35, 140, 422, 425
Tsp45I	GTSAC	1 cut(s)	121
TspRI	CASTG	2 cut(s)	424, 519
Van91I	CCANNNNNTGG	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	4 cut(s)	206, 264, 545, 589
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	309, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.