Rh5BG098900

Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006937
Physical Location & Seq
Reverse (-)
9000175 .. 9001670
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG098900.1

Sequence Viewer

Length: 1014 bp
ATGGGTTTCACCTTTGATTCAGGGACCAGAAGGAAAACTAAAGTTTTTGATTCTGACAAACTTCTGAAGGGCACAACTATTATAGCATTCATTGGTGAAACAGCAATTCACTTGGCTAGTGATCAGAGGGGAACGCTCCCAAACTATGTATTGAATGATGGATTGGTAAAGTTGTTTGCTATTGACAGAGATATTATTGGCACCGGGGCAGGATTCACAGCTAATTGCAGGGAGTTTTTAACAGCTGCATTTGAAGTAAACAGAGCAGTTTTTAGAGGTGTTGCAGCTCCTGAACGTGTGTATCTTATGGCCAGGGTTGTGATGGCATGCATGGATAATTGGGAAACAAGGAATCCTGGACACACATGTCAGGAGGAAATTGTAATAGCCGGTTGCTATTATGCTCAGCCTTTGGTTTTTAGAATTAGGTCCAGCACCCTTGGCGGGATAGTTTATGGAACCAGAGTTGGTTATACTATGGTTAGTGGAAGTGGTAGGACACAGGCTGCCCAGTTTGTTGAGGCCCATAGAGATAATCTACAGCATGAGACCCTTGTGGAGTCAACCATAGTTGCTGCTTCGGTTGTGGATCCAATGACCGGCGGCCACGTGCAGACTGTTCAAATTCCAATAGGGATAGGCGGCAATGATGCCTTTAATGTTTCTGTTTGGTCAGTGCTGCAACTATTAGCGAGGGATTTGGATCGGTATAGGCACCTCCTTGAGAATTCGCTCCTCTTTGTGTGCCATGGTTTCGACTACACCGAACAGAATGAACCAATGCTTTTACAAGCTCTAGCAGGGCGATTCCCAGGCACTCGCACCCACGTCATTTCTCGTCGAAATCTAGTCATCAGAATTATAACTTTTAACGATGCTTGGTCTGCCATAGTAGCTTGGGAAGATACTAGAGATGGGATGGAACTGGCTATCGGACCGCAGAGGTACACACTAGAGTTCTTTGAGCCTACTCCTCAGCAAATCGGGATACTACGGTATGAAGAGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

337

Amino Acids

37.59

Weight (kDa)

6.08

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 23 - 204 1.2e-09 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AasI GACNNNNNNGTC 1 cut(s) 366
AccB1I GGYRCC 2 cut(s) 200, 714
AciI CCGC 4 cut(s) 444, 603, 642, 938
AclWI GGATC 3 cut(s) 584, 597, 711
AcoI YGGCCR 2 cut(s) 309, 604
AcsI RAATTY 2 cut(s) 624, 727
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 610
AfaI GTAC 1 cut(s) 947
AfiI CCNNNNNNNGG 2 cut(s) 444, 599
AflIII ACRYGT 2 cut(s) 295, 365
AgsI TTSAA 3 cut(s) 154, 254, 623
AjiI CACGTC 1 cut(s) 829
AjnI CCWGG 3 cut(s) 311, 355, 811
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 5 cut(s) 221, 245, 287, 794, 896
AluI AGCT 5 cut(s) 221, 245, 287, 794, 896
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 3 cut(s) 584, 597, 711
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 3 cut(s) 309, 522, 604
ApeKI GCWGC 5 cut(s) 245, 284, 506, 575, 679
ApoI RAATTY 2 cut(s) 624, 727
AspS9I GGNCC 4 cut(s) 24, 429, 523, 935
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 3 cut(s) 24, 429, 935
BaeGI GKGCMC 1 cut(s) 74
BaeI ACNNNNGTAYC 4 cut(s) 284, 317, 980, 1013
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 200, 714
BbrPI CACGTG 1 cut(s) 610
BbvCI CCTCAGC 1 cut(s) 975
BbvI GCAGC 5 cut(s) 232, 296, 493, 562, 666
BccI CCATC 4 cut(s) 152, 316, 908, 913
BciT130I CCWGG 3 cut(s) 313, 357, 813
BciVI GTATCC 1 cut(s) 981
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 5 cut(s) 117, 797, 848, 909, 953
BfmI CTRYAG 1 cut(s) 539
BfuI GTATCC 1 cut(s) 981
BisI GCNGC 7 cut(s) 246, 285, 507, 576, 604, 643, 680
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 7 cut(s) 247, 286, 508, 577, 605, 644, 681
Bme1390I CCNGG 4 cut(s) 205, 313, 357, 813
Bme18I GGWCC 3 cut(s) 24, 429, 935
BmgBI CACGTC 1 cut(s) 829
BmgT120I GGNCC 4 cut(s) 24, 429, 523, 935
BmiI GGNNCC 5 cut(s) 25, 202, 460, 591, 716
BmrFI CCNGG 4 cut(s) 205, 313, 357, 813
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 640, 865
BmuI ACTGGG 1 cut(s) 505
Bpu10I CCTNAGC 1 cut(s) 975
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 5 cut(s) 204, 312, 439, 748, 811
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 599
Bse118I RCCGGY 2 cut(s) 389, 599
Bse1I ACTGG 2 cut(s) 511, 930
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 3 cut(s) 313, 357, 813
BseDI CCNNGG 5 cut(s) 204, 312, 439, 748, 811
BseGI GGATG 1 cut(s) 924
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 2 cut(s) 444, 599
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 419, 989
BseNI ACTGG 2 cut(s) 511, 930
BseRI GAGGAG 2 cut(s) 725, 963
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 5 cut(s) 232, 296, 493, 562, 666
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 3 cut(s) 311, 524, 606
BshNI GGYRCC 2 cut(s) 200, 714
BsiSI CCGG 3 cut(s) 204, 390, 600
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 444, 599
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 3 cut(s) 311, 524, 606
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 121, 589, 703
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 4 cut(s) 444, 603, 642, 938
BspANI GGCC 3 cut(s) 311, 524, 606
BspCNI CTCAG 2 cut(s) 418, 988
BspLI GGNNCC 5 cut(s) 25, 202, 460, 591, 716
BspPI GGATC 3 cut(s) 584, 597, 711
BspQI GCTCTTC 1 cut(s) 996
BspT107I GGYRCC 2 cut(s) 200, 714
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 2 cut(s) 389, 599
BsrI ACTGG 2 cut(s) 511, 930
BssAI RCCGGY 2 cut(s) 389, 599
BssECI CCNNGG 5 cut(s) 204, 312, 439, 748, 811
BssMI GATC 3 cut(s) 121, 589, 703
BssT1I CCWWGG 2 cut(s) 439, 748
Bst2UI CCWGG 3 cut(s) 313, 357, 813
Bst4CI ACNGT 2 cut(s) 619, 996
Bst6I CTCTTC 1 cut(s) 996
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 405, 975
BstDSI CCRYGG 1 cut(s) 748
BstF5I GGATG 1 cut(s) 924
BstKTI GATC 3 cut(s) 124, 592, 706
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 121, 589, 703
BstMWI GCNNNNNNNGC 3 cut(s) 441, 884, 893
BstNI CCWGG 3 cut(s) 313, 357, 813
BstNSI RCATGY 2 cut(s) 330, 369
BstSCI CCNGG 4 cut(s) 203, 311, 355, 811
BstSFI CTRYAG 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 5 cut(s) 232, 296, 493, 562, 666
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BsuI GTATCC 1 cut(s) 981
BsuRI GGCC 3 cut(s) 311, 524, 606
BtgI CCRYGG 1 cut(s) 748
BtrI CACGTC 1 cut(s) 829
BtsCI GGATG 1 cut(s) 924
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 290
Cfr10I RCCGGY 2 cut(s) 389, 599
Cfr13I GGNCC 4 cut(s) 24, 429, 523, 935
CpoI CGGWCCG 1 cut(s) 935
Csp6I GTAC 1 cut(s) 946
CspI CGGWCCG 1 cut(s) 935
CviAII CATG 5 cut(s) 327, 331, 366, 545, 749
CviQI GTAC 1 cut(s) 946
DdeI CTNAG 2 cut(s) 405, 975
DpnI GATC 3 cut(s) 123, 591, 705
DpnII GATC 3 cut(s) 121, 589, 703
DrdI GACNNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 366
EaeI YGGCCR 2 cut(s) 309, 604
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Eco130I CCWWGG 2 cut(s) 439, 748
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 3 cut(s) 24, 429, 935
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 3 cut(s) 311, 355, 811
EcoT14I CCWWGG 2 cut(s) 439, 748
EcoT22I ATGCAT 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 439, 748
FaeI CATG 5 cut(s) 330, 334, 369, 548, 752
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 326, 330, 365, 544, 748
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 7 cut(s) 246, 285, 507, 576, 604, 643, 680
FokI GGATG 1 cut(s) 931
Fsp4HI GCNGC 7 cut(s) 246, 285, 507, 576, 604, 643, 680
FspBI CTAG 5 cut(s) 117, 797, 848, 909, 953
GluI GCNGC 7 cut(s) 246, 285, 507, 576, 604, 643, 680
HaeIII GGCC 3 cut(s) 311, 524, 606
HapII CCGG 3 cut(s) 204, 390, 600
Hin1II CATG 5 cut(s) 330, 334, 369, 548, 752
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 6 cut(s) 17, 50, 213, 352, 560, 807
HpaII CCGG 3 cut(s) 204, 390, 600
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 259, 564, 948
Hpy188I TCNGA 5 cut(s) 55, 66, 126, 857, 935
Hpy188III TCNNGA 3 cut(s) 290, 371, 985
Hpy8I GTNNAC 3 cut(s) 259, 564, 948
Hpy99I CGWCG 1 cut(s) 843
HpyAV CCTTC 2 cut(s) 24, 61
HpyCH4III ACNGT 2 cut(s) 619, 996
HpyCH4IV ACGT 3 cut(s) 295, 609, 828
HpyCH4V TGCA 6 cut(s) 228, 248, 284, 330, 613, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 441, 884, 893
HpyF3I CTNAG 2 cut(s) 405, 975
HpySE526I ACGT 3 cut(s) 295, 609, 828
Hsp92II CATG 5 cut(s) 330, 334, 369, 548, 752
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 589, 703
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 3 cut(s) 141, 292, 738
Lsp1109I GCAGC 5 cut(s) 232, 296, 493, 562, 666
LweI GCATC 2 cut(s) 640, 865
MaeI CTAG 5 cut(s) 117, 797, 848, 909, 953
MaeII ACGT 3 cut(s) 295, 609, 828
MalI GATC 3 cut(s) 123, 591, 705
MboI GATC 3 cut(s) 121, 589, 703
MboII GAAGA 2 cut(s) 914, 1013
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 8 cut(s) 105, 223, 337, 378, 423, 624, 727, 858
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 9 cut(s) 120, 269, 367, 514, 687, 728, 746, 936, 984
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 332
MscI TGGCCA 1 cut(s) 311
MseI TTAA 3 cut(s) 239, 657, 870
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 3 cut(s) 204, 390, 600
MspR9I CCNGG 4 cut(s) 205, 313, 357, 813
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 3 cut(s) 313, 357, 813
MwoI GCNNNNNNNGC 3 cut(s) 441, 884, 893
NciI CCSGG 1 cut(s) 205
NcoI CCATGG 1 cut(s) 748
NdeII GATC 3 cut(s) 121, 589, 703
NlaIII CATG 5 cut(s) 330, 334, 369, 548, 752
NlaIV GGNNCC 5 cut(s) 25, 202, 460, 591, 716
NsiI ATGCAT 1 cut(s) 332
NspI RCATGY 2 cut(s) 330, 369
PaeI GCATGC 1 cut(s) 330
PciI ACATGT 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 5 cut(s) 17, 50, 213, 352, 807
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 7 cut(s) 247, 286, 508, 577, 605, 644, 681
PleI GAGTC 1 cut(s) 568
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 1 cut(s) 568
Ppu21I YACGTR 1 cut(s) 610
PscI ACATGT 1 cut(s) 365
PsiI TTATAA 1 cut(s) 863
Psp6I CCWGG 3 cut(s) 311, 355, 811
PspCI CACGTG 1 cut(s) 610
PspGI CCWGG 3 cut(s) 311, 355, 811
PspN4I GGNNCC 5 cut(s) 25, 202, 460, 591, 716
PspPI GGNCC 4 cut(s) 24, 429, 523, 935
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 947
RsaNI GTAC 1 cut(s) 946
Rsr2I CGGWCCG 1 cut(s) 935
RsrII CGGWCCG 1 cut(s) 935
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 3 cut(s) 239, 657, 870
SatI GCNGC 7 cut(s) 246, 285, 507, 576, 604, 643, 680
Sau3AI GATC 3 cut(s) 121, 589, 703
Sau96I GGNCC 4 cut(s) 24, 429, 523, 935
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 4 cut(s) 205, 313, 357, 813
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 2 cut(s) 640, 865
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 3 cut(s) 24, 429, 935
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 330
Sse9I AATT 8 cut(s) 105, 223, 337, 378, 423, 624, 727, 858
SsiI CCGC 4 cut(s) 444, 603, 642, 938
SspMI CTAG 5 cut(s) 117, 797, 848, 909, 953
StyD4I CCNGG 4 cut(s) 203, 311, 355, 811
StyI CCWWGG 2 cut(s) 439, 748
TaaI ACNGT 2 cut(s) 619, 996
TaiI ACGT 3 cut(s) 298, 612, 831
TaqI TCGA 2 cut(s) 756, 841
TasI AATT 8 cut(s) 105, 223, 337, 378, 423, 624, 727, 858
TauI GCSGC 2 cut(s) 606, 645
TfiI GAWTC 5 cut(s) 17, 50, 213, 352, 807
Tru1I TTAA 3 cut(s) 239, 657, 870
Tru9I TTAA 3 cut(s) 239, 657, 870
TscAI CASTG 1 cut(s) 681
TseI GCWGC 5 cut(s) 245, 284, 506, 575, 679
TspDTI ATGAA 3 cut(s) 79, 789, 1014
TspRI CASTG 1 cut(s) 681
VpaK11BI GGWCC 3 cut(s) 24, 429, 935
XapI RAATTY 2 cut(s) 624, 727
XceI RCATGY 2 cut(s) 330, 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 5 cut(s) 117, 797, 848, 909, 953
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.