Rh3CG086800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006937
Physical Location & Seq
Forward (+)
6784086 .. 6784427
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG086800.1

Sequence Viewer

Length: 342 bp
ATGTTCTATAATTTATTATCAGACGGCTACAAGGACTTGGCTATGGAACTCATTGATAAGGCCACAAAAGAGGGTGAAGCATCGAAGGTGGTTGTCATGACCAGCGTACTTAAGGAGTACACTAAGGCTGGCAAGGCGACGAAGGCTCTGCATTTGTACCAAAAGATGTTAGATTCCGAAGATTGTGCTCCCAATGCTTACACTTACAATGCCCTTATCAAGGCACTGGCTGCAGACCTGGACCCCAATTTTCTCAGGGTTGACAAGGAATGTGTCATGGAGATGATGGGGAAGACAATGCAGCCCAGTGCCAGCATATACACGTCTGTGTTTGAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

5.1

Isoelectric Point (pI)

17.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 30 - 77 1.1e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 108, 119, 158
AfiI CCNNNNNNNGG 1 cut(s) 220
AflII CTTAAG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 321
AjiI CACGTC 1 cut(s) 324
AjnI CCWGG 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 190
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 230, 301
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 217, 313
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 4 cut(s) 130, 164, 167, 201
BciT130I CCWGG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 231, 302
BlsI GCNGC 2 cut(s) 232, 303
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 231, 306
BseBI CCWGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 231, 306
BseXI GCAGC 2 cut(s) 217, 313
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 220
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 190
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 110
BsrI ACTGG 2 cut(s) 231, 306
Bst2UI CCWGG 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 130, 313
BstDEI CTNAG 2 cut(s) 123, 254
BstENI CCTNNNNNAGG 1 cut(s) 218
BstMWI GCNNNNNNNGC 4 cut(s) 134, 143, 194, 230
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 217, 313
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 62
BtrI CACGTC 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 224, 313
Cac8I GCNNGC 2 cut(s) 130, 313
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 107, 118, 157
CviAII CATG 2 cut(s) 97, 277
CviJI RGCY 7 cut(s) 27, 41, 62, 128, 146, 230, 304
CviKI_1 RGCY 7 cut(s) 27, 41, 62, 128, 146, 230, 304
CviQI GTAC 3 cut(s) 107, 118, 157
DdeI CTNAG 2 cut(s) 123, 254
Eco47I GGWCC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 100, 280
FaiI YATR 6 cut(s) 9, 44, 98, 278, 317, 319
FatI CATG 2 cut(s) 96, 276
Fnu4HI GCNGC 2 cut(s) 231, 302
Fsp4HI GCNGC 2 cut(s) 231, 302
GluI GCNGC 2 cut(s) 231, 302
HaeIII GGCC 1 cut(s) 62
Hin1II CATG 2 cut(s) 100, 280
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 120, 262
Hpy188I TCNGA 2 cut(s) 22, 178
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 120, 262
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 79, 136
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 151, 233, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 143, 194, 230
HpyF3I CTNAG 2 cut(s) 123, 254
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 2 cut(s) 100, 280
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 114, 115, 212, 224, 241, 251, 319, 325
Lsp1109I GCAGC 2 cut(s) 217, 313
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 323
MboII GAAGA 2 cut(s) 191, 304
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 10, 247
MnlI CCTC 2 cut(s) 64, 328
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 281, 326
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 134, 143, 194, 230
NlaIII CATG 2 cut(s) 100, 280
NlaIV GGNNCC 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 326
PagI TCATGA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 232, 303
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 235
RsaI GTAC 3 cut(s) 108, 119, 158
RsaNI GTAC 3 cut(s) 107, 118, 157
RseI CAYNNNNRTG 2 cut(s) 281, 326
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 231, 302
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 90, 240, 326
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 2 cut(s) 281, 326
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 10, 247
StyD4I CCNGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 10, 247
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 231, 313
TseI GCWGC 2 cut(s) 230, 301
TspRI CASTG 2 cut(s) 231, 313
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.