Rh3CG087000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006937
Physical Location & Seq
Forward (+)
6785613 .. 6786077
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG087000.1

Sequence Viewer

Length: 465 bp
ATGGAAATAATTGGTGCCATGGGTGTCTTTCTCGCTGCTGATCAGCGAGGTACTATTGACAAACAATATGTAGTGGGTGATAATTACTGCAAGTTCTATAACATTGGGCAAACGATCTTGGTGACTATGGCAAGAGATGCAGCATTGTGTAAGGAAATGCTAAACACAGCAAAAAAGGTTGTCAACACAGCTGAATTTGAACGCATTCACCTTGTAACCTTTACTGCAATGGCTTTTATTAATAATTGGGAAATATGTAATCCCGGTAAAGCGTGTAAAGTAGAGACCCTAATTTCTAGTTGGCACAACACTAAGGCTATACTATATTCAGTTGGACCTAAGCGATCGGAAGGAGGTGTTATAAGATGTATAACGCTCCCTGGAATTGTCGCAACATCAGGAAACGGTGGTGAACATGCTAAAAGGTTTGCAAATCAGTATATAAGGAAAAGCGACACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

8.99

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 35, 140
ApoI RAATTY 1 cut(s) 194
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 4 cut(s) 89, 133, 200, 422
AvaII GGWCC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 22, 152
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 297
BisI GCNGC 2 cut(s) 36, 141
BlsI GCNGC 2 cut(s) 37, 142
Bme1390I CCNGG 2 cut(s) 264, 381
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 264, 381
BmsI GCATC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 18, 379
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 18, 379
BseMI GCAATG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 22, 152
Bsh1285I CGRYCG 1 cut(s) 347
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 3 cut(s) 40, 114, 344
Bsp19I CCATGG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 18, 379
BssMI GATC 3 cut(s) 40, 114, 344
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 312, 339
BstDSI CCRYGG 1 cut(s) 18
BstKTI GATC 3 cut(s) 43, 117, 347
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 3 cut(s) 40, 114, 344
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 262, 379
BstV1I GCAGC 2 cut(s) 22, 152
BtgI CCRYGG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 19, 416
CviJI RGCY 3 cut(s) 191, 233, 317
CviKI_1 RGCY 3 cut(s) 191, 233, 317
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 312, 339
DpnI GATC 3 cut(s) 42, 116, 346
DpnII GATC 3 cut(s) 40, 114, 344
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 22, 419
FalI AAGNNNNNCTT 1 cut(s) 442
FatI CATG 2 cut(s) 18, 415
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 36, 141
Fsp4HI GCNGC 2 cut(s) 36, 141
FspBI CTAG 1 cut(s) 297
GluI GCNGC 2 cut(s) 36, 141
HapII CCGG 1 cut(s) 264
Hin1II CATG 2 cut(s) 22, 419
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 264
HphI GGTGA 4 cut(s) 89, 133, 200, 422
Hpy166II GTNNAC 2 cut(s) 184, 413
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 2 cut(s) 184, 413
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 4 cut(s) 90, 140, 227, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 312, 339
Hsp92II CATG 2 cut(s) 22, 419
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 114, 344
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 4 cut(s) 277, 366, 384, 393
Lsp1109I GCAGC 2 cut(s) 22, 152
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 121, 214
MalI GATC 3 cut(s) 42, 116, 346
MboI GATC 3 cut(s) 40, 114, 344
MluCI AATT 6 cut(s) 9, 82, 194, 244, 291, 384
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 2 cut(s) 41, 347
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 2 cut(s) 264, 381
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 18
NdeII GATC 3 cut(s) 40, 114, 344
NlaIII CATG 2 cut(s) 22, 419
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 419
PctI GAATGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 37, 142
Ple19I CGATCG 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 335
PvuI CGATCG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 36, 141
Sau3AI GATC 3 cut(s) 40, 114, 344
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 264, 381
SetI ASST 8 cut(s) 52, 180, 193, 213, 221, 340, 358, 428
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 335
Sse9I AATT 6 cut(s) 9, 82, 194, 244, 291, 384
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 262, 379
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 407
TasI AATT 6 cut(s) 9, 82, 194, 244, 291, 384
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 35, 140
Tsp45I GTSAC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 335
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.