Rroxscaffold_1G00063360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006937
Physical Location & Seq
Reverse (-)
85262265 .. 85264962
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063360.1

Sequence Viewer

Length: 648 bp
ATGCACGTTGGATATTCTGCGATTATCAAAAGTGGAAAGACACATGCTGCCGAGTTTGTTGAAGCCCATAGAAACAATCTACAGCCTCATACCCTTGTGGAGTCGGCCATAGTTGTTGCTTCGGTTAAGGAAAAGTCCACCGGTGGCCGTGTGGAGAGAGCTGAAATTCGGATATGCGGCAATCAAGCAGCCATTTTTTGGGACCCCCCATTGTCGGTGCTGCAATTATTAGAGAGGGATTTGAATCGATATAGGCGGCACCTTGAGAATTCTTTCTTCTTTGTGTGTCATGGTTTTCCCTACAACAAAGAGTTTGAACCAATACTTTTACAAGATCTTGCAGGACGATTCCCAAACTCGAACATCCACTTAGAACAGAAATTACAAAACTTGAGCTTCGCACGCCCGAATCTTGGTTACAACGGCGCCCGAGAAAACAAGCCATCACAAACCTTACAAAATACGTCACAGCCCCTGCCAACGGTTGCGTTCTTTGGGACATCGGTGTTGTACGGGCATTCGGATGATGTGTGTTCATCCAAGGAACAAATCAAACATCTACCTTCTGGAAGTTTACAAATCCGTTATAAAACAATAATAGCAATAAGAATGATTTATGCAGATAACAAACCCAAAATATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

9.28

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AccB1I GGYRCC 2 cut(s) 258, 425
AccB7I CCANNNNNTGG 1 cut(s) 198
AciI CCGC 2 cut(s) 177, 256
AcoI YGGCCR 2 cut(s) 105, 145
AcsI RAATTY 2 cut(s) 165, 268
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 4 cut(s) 198, 214, 413, 481
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 62, 244, 317
AluBI AGCT 2 cut(s) 161, 396
AluI AGCT 2 cut(s) 161, 396
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 2 cut(s) 105, 145
ApeKI GCWGC 3 cut(s) 47, 188, 220
ApoI RAATTY 2 cut(s) 165, 268
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 633
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 258, 425
BbvI GCAGC 3 cut(s) 34, 200, 207
BccI CCATC 1 cut(s) 451
BceAI ACGGC 2 cut(s) 132, 439
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 429
BglII AGATCT 1 cut(s) 334
BisI GCNGC 5 cut(s) 48, 178, 189, 221, 257
BlsI GCNGC 5 cut(s) 49, 179, 190, 222, 258
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 4 cut(s) 203, 204, 260, 427
BpuEI CTTGAG 2 cut(s) 284, 412
Bsa29I ATCGAT 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 214, 413, 481
Bse118I RCCGGY 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 3 cut(s) 363, 529, 536
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 4 cut(s) 198, 214, 413, 481
BseXI GCAGC 3 cut(s) 34, 200, 207
BshFI GGCC 2 cut(s) 107, 147
BshNI GGYRCC 2 cut(s) 258, 425
BshTI ACCGGT 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 215, 511
BslI CCNNNNNNNGG 4 cut(s) 198, 214, 413, 481
BsmFI GGGAC 2 cut(s) 215, 511
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 2 cut(s) 107, 147
BsoBI CYCGRG 1 cut(s) 429
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 177, 256
BspANI GGCC 2 cut(s) 107, 147
BspDI ATCGAT 1 cut(s) 247
BspLI GGNNCC 4 cut(s) 203, 204, 260, 427
BspT107I GGYRCC 2 cut(s) 258, 425
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 1 cut(s) 484
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 3 cut(s) 363, 529, 536
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 34, 200, 207
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 2 cut(s) 107, 147
BsuTUI ATCGAT 1 cut(s) 247
BtsCI GGATG 3 cut(s) 363, 529, 536
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 247
Csp6I GTAC 1 cut(s) 511
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 3 cut(s) 44, 290, 645
CviJI RGCY 9 cut(s) 65, 85, 107, 147, 161, 191, 396, 442, 472
CviKI_1 RGCY 9 cut(s) 65, 85, 107, 147, 161, 191, 396, 442, 472
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 1 cut(s) 370
DinI GGCGCC 1 cut(s) 427
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 105, 145
Eco130I CCWWGG 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 540
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 3 cut(s) 47, 293, 648
FaqI GGGAC 2 cut(s) 215, 511
FatI CATG 3 cut(s) 43, 289, 644
Fnu4HI GCNGC 5 cut(s) 48, 178, 189, 221, 257
FokI GGATG 3 cut(s) 350, 523, 536
Fsp4HI GCNGC 5 cut(s) 48, 178, 189, 221, 257
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 48, 178, 189, 221, 257
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 2 cut(s) 107, 147
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 3 cut(s) 47, 293, 648
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HinfI GANTC 4 cut(s) 101, 244, 348, 409
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 633
Hpy166II GTNNAC 2 cut(s) 138, 575
Hpy188I TCNGA 2 cut(s) 171, 523
Hpy188III TCNNGA 1 cut(s) 567
Hpy8I GTNNAC 2 cut(s) 138, 575
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 2 cut(s) 6, 464
HpyCH4V TGCA 4 cut(s) 4, 223, 341, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 2 cut(s) 6, 464
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 3 cut(s) 47, 293, 648
HspAI GCGC 1 cut(s) 426
KasI GGCGCC 1 cut(s) 425
KflI GGGWCCC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 154, 327, 488, 552
Lsp1109I GCAGC 3 cut(s) 34, 200, 207
MaeII ACGT 2 cut(s) 6, 464
MaeIII GTNAC 2 cut(s) 416, 465
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 165, 224, 268, 380
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 96, 228
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 402
NarI GGCGCC 1 cut(s) 426
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 47, 293, 648
NlaIV GGNNCC 4 cut(s) 203, 204, 260, 427
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 465
NspI RCATGY 1 cut(s) 47
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 3 cut(s) 244, 348, 409
PflMI CCANNNNNTGG 1 cut(s) 198
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 5 cut(s) 49, 179, 190, 222, 258
PleI GAGTC 1 cut(s) 109
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 202
PsiI TTATAA 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 203, 204, 260, 427
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 366, 398
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 5 cut(s) 48, 178, 189, 221, 257
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 110
SetI ASST 7 cut(s) 9, 163, 264, 398, 455, 467, 565
SfcI CTRYAG 1 cut(s) 80
SfoI GGCGCC 1 cut(s) 427
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 263, 391
SmoI CTYRAG 2 cut(s) 263, 391
Sse9I AATT 4 cut(s) 165, 224, 268, 380
SsiI CCGC 2 cut(s) 177, 256
SspDI GGCGCC 1 cut(s) 425
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 2 cut(s) 9, 467
TaqI TCGA 2 cut(s) 247, 359
TasI AATT 4 cut(s) 165, 224, 268, 380
TauI GCSGC 2 cut(s) 180, 259
TfiI GAWTC 3 cut(s) 244, 348, 409
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 3 cut(s) 47, 188, 220
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 1 cut(s) 525
TspGWI ACGGA 1 cut(s) 572
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 2 cut(s) 165, 268
XceI RCATGY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.