Rroxscaffold_1G00063370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006937
Physical Location & Seq
Reverse (-)
85265124 .. 85266968
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063370.1

Sequence Viewer

Length: 555 bp
ATGCCATTTATTGGTCTAAACACAATATACTTGGTTAGTGATCAAAGGCAAGTTACAACTGACCAACGGCAAACTACCTATGTAGTGAATGATGCATGGAAAAAGTTGTATGACATTGACAATGATATCCTTGCCACAGCGGCAGGTGATTCGCAAGGATGTTTAGAGTTTGCACTATCTACATTTGATGTAAATAGAGCAACTTTTGGTGGTGTCCAAGCTGGTGAACGTGTATTTCTTGTGGCGAGGGTGGTGATAGCTCGCATGGATGATTGGGAGATGAGAAACCTCGGACTCACATGTCTGGAGGACTTTATAATAGCTGCGAGCGGGTTGTTCGAAAGATGTTTAGATTTTGTACAAGCTACAATTAAAGTAAATATTACAGCTTTTTGTGATGTCCCAGCTCTTGAACGTGTGTATCTTGCTGCCAAGGTTGTGATGGCATGCATGGATGATTGGGAAATGAGGAGCCCAGGACTCACATGTCGGGAGGAGTTTATAATAGCTGGTTGCCATTATACTAGCAGTTTTTTCTGGTGTTCCAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.65

Weight (kDa)

4.52

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 317, 503
AarI CACCTGC 1 cut(s) 134
AasI GACNNNNNNGTC 2 cut(s) 300, 486
Acc36I ACCTGC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 2 cut(s) 140, 330
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 4 cut(s) 229, 299, 415, 485
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 8 cut(s) 221, 260, 323, 365, 389, 407, 509, 549
AluI AGCT 8 cut(s) 221, 260, 323, 365, 389, 407, 509, 549
ApeKI GCWGC 2 cut(s) 323, 428
AsuHPI GGTGA 3 cut(s) 158, 236, 265
AsuII TTCGAA 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 404, 437
BanII GRGCYC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 310, 415
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 1 cut(s) 40
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 3 cut(s) 141, 324, 429
BlsI GCNGC 3 cut(s) 142, 325, 430
Bme1390I CCNGG 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 289, 432, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 3 cut(s) 289, 432, 475
BseGI GGATG 3 cut(s) 164, 274, 460
BseLI CCNNNNNNNGG 1 cut(s) 11
BseRI GAGGAG 2 cut(s) 484, 509
BseXI GCAGC 2 cut(s) 310, 415
BseYI CCCAGC 1 cut(s) 403
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 140, 330
BspLI GGNNCC 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 289, 432, 475
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 477
BstAUI TGTACA 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 262, 328, 448
BstF5I GGATG 3 cut(s) 164, 274, 460
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 3 cut(s) 303, 450, 489
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 310, 415
BtsCI GGATG 3 cut(s) 164, 274, 460
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 3 cut(s) 262, 328, 448
Csp6I GTAC 1 cut(s) 359
CviAII CATG 6 cut(s) 96, 265, 300, 447, 451, 486
CviJI RGCY 9 cut(s) 221, 260, 323, 365, 389, 407, 474, 509, 549
CviKI_1 RGCY 9 cut(s) 221, 260, 323, 365, 389, 407, 474, 509, 549
CviQI GTAC 1 cut(s) 359
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DrdI GACNNNNNNGTC 2 cut(s) 300, 486
DseDI GACNNNNNNGTC 2 cut(s) 300, 486
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 432
EcoT22I ATGCAT 2 cut(s) 97, 452
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 6 cut(s) 99, 268, 303, 450, 454, 489
FaqI GGGAC 1 cut(s) 386
FatI CATG 6 cut(s) 95, 264, 299, 446, 450, 485
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 141, 324, 429
FokI GGATG 3 cut(s) 171, 281, 467
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 3 cut(s) 141, 324, 429
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 141, 324, 429
GsaI CCCAGC 1 cut(s) 407
GsuI CTGGAG 1 cut(s) 326
Hin1II CATG 6 cut(s) 99, 268, 303, 450, 454, 489
HinfI GANTC 3 cut(s) 149, 294, 480
HphI GGTGA 3 cut(s) 158, 236, 265
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 3 cut(s) 305, 410, 491
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4IV ACGT 2 cut(s) 229, 415
HpyCH4V TGCA 3 cut(s) 95, 173, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 229, 415
Hsp92II CATG 6 cut(s) 99, 268, 303, 450, 454, 489
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 471, 554
LpnPI CCDG 8 cut(s) 129, 207, 290, 417, 462, 489, 495, 523
Lsp1109I GCAGC 2 cut(s) 310, 415
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 229, 415
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 330
MboI GATC 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 1 cut(s) 369
MlyI GAGTC 2 cut(s) 288, 474
MnlI CCTC 5 cut(s) 240, 299, 301, 462, 487
Mph1103I ATGCAT 2 cut(s) 97, 452
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 40
NlaIII CATG 6 cut(s) 99, 268, 303, 450, 454, 489
NlaIV GGNNCC 1 cut(s) 473
NsiI ATGCAT 2 cut(s) 97, 452
NspI RCATGY 3 cut(s) 303, 450, 489
NspV TTCGAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 134
PciI ACATGT 2 cut(s) 299, 485
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 11
PkrI GCNGC 3 cut(s) 142, 325, 430
PleI GAGTC 2 cut(s) 288, 474
PpsI GAGTC 2 cut(s) 288, 474
PscI ACATGT 2 cut(s) 299, 485
PsiI TTATAA 2 cut(s) 317, 503
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 473
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 141, 324, 429
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 2 cut(s) 288, 474
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 339
SphI GCATGC 1 cut(s) 450
Sse9I AATT 1 cut(s) 369
SsiI CCGC 2 cut(s) 140, 330
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 432
TaiI ACGT 2 cut(s) 232, 418
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 369
TatI WGTACW 1 cut(s) 358
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 323, 428
Van91I CCANNNNNTGG 1 cut(s) 11
XceI RCATGY 3 cut(s) 303, 450, 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 2 cut(s) 97, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.