Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

9466674 .. 9468502

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCATTTATTGGTCTAAATACAATATACTTGGTTAGTGATCAGAGGCAAGTTACAGCTGACCAACGGCAAACTACCTATGTAGTGAATGATGCATGGAAAAAGTTGTATGACATTGACAATGATATCCTTGCCACAGCGGCAGGTGATTCGCAAGGATGTTTAGAGTTTGCACTATCTACATTTGATGTAAATAGAGCAACTTTTGGTGGTGTCCAAGCTGGTGAACGTGTATTTCTTGTGGCGAGGGTGGTGATAGCTCGCATGGATGATTGGGAGATGAGAAACCTCAGACTCACGTGTCTGGAGGACTTTATAATAGCTGCTCTTGAACGTGTGTATCTTGTTGCCAGGGTTGTGATGGCATGCATGGATGATTGGGAAATGAGGAGCCCAGGACTCACATGTCAGGAGGAGTTTATAATAGCTGGTTGCCATTATACTAGCAGCTTTTTCTGGTGGTCCAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

4.52

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	317, 422
AarI	CACCTGC	1 cut(s)	134
AasI	GACNNNNNNGTC	2 cut(s)	300, 405
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	1 cut(s)	140
AcvI	CACGTG	1 cut(s)	300
AflIII	ACRYGT	4 cut(s)	229, 299, 334, 404
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	350, 394
AluBI	AGCT	7 cut(s)	59, 221, 260, 323, 428, 450, 468
AluI	AGCT	7 cut(s)	59, 221, 260, 323, 428, 450, 468
AlwNI	CAGNNNCTG	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	323, 447
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	158, 236, 265
AvaII	GGWCC	1 cut(s)	462
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
BanII	GRGCYC	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	310, 459
BccI	CCATC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	2 cut(s)	352, 396
BclI	TGATCA	1 cut(s)	40
BfaI	CTAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	141, 324, 448
BlsI	GCNGC	3 cut(s)	142, 325, 449
Bme1390I	CCNGG	2 cut(s)	352, 396
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	2 cut(s)	352, 396
BmsI	GCATC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	351, 394
BseBI	CCWGG	2 cut(s)	352, 396
BseDI	CCNNGG	2 cut(s)	351, 394
BseGI	GGATG	3 cut(s)	164, 274, 379
BseMII	CTCAG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	403, 428
BseXI	GCAGC	2 cut(s)	310, 459
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	351, 394
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	352, 396
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	262, 367
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	164, 274, 379
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	352, 396
BstNSI	RCATGY	2 cut(s)	369, 408
BstSCI	CCNGG	2 cut(s)	350, 394
BstV1I	GCAGC	2 cut(s)	310, 459
BtsCI	GGATG	3 cut(s)	164, 274, 379
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	262, 367
CaiI	CAGNNNCTG	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	462
CviAII	CATG	5 cut(s)	96, 265, 366, 370, 405
CviJI	RGCY	8 cut(s)	59, 221, 260, 323, 393, 428, 450, 468
CviKI_1	RGCY	8 cut(s)	59, 221, 260, 323, 393, 428, 450, 468
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DrdI	GACNNNNNNGTC	2 cut(s)	300, 405
DseDI	GACNNNNNNGTC	2 cut(s)	300, 405
Eco24I	GRGCYC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	350, 394
EcoRV	GATATC	1 cut(s)	127
EcoT22I	ATGCAT	2 cut(s)	97, 371
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	5 cut(s)	99, 268, 369, 373, 408
FatI	CATG	5 cut(s)	95, 264, 365, 369, 404
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	141, 324, 448
FokI	GGATG	3 cut(s)	171, 281, 386
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	141, 324, 448
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	3 cut(s)	141, 324, 448
GsuI	CTGGAG	1 cut(s)	326
Hin1II	CATG	5 cut(s)	99, 268, 369, 373, 408
HinfI	GANTC	3 cut(s)	149, 294, 399
HphI	GGTGA	3 cut(s)	158, 236, 265
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	45, 293
Hpy188III	TCNNGA	4 cut(s)	305, 329, 410, 471
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4IV	ACGT	3 cut(s)	229, 299, 334
HpyCH4V	TGCA	3 cut(s)	95, 173, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	3 cut(s)	229, 299, 334
Hsp92II	CATG	5 cut(s)	99, 268, 369, 373, 408
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	390, 473
Lsp1109I	GCAGC	2 cut(s)	310, 459
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	3 cut(s)	229, 299, 334
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	288, 393
MnlI	CCTC	6 cut(s)	39, 240, 299, 301, 381, 406
Mph1103I	ATGCAT	2 cut(s)	97, 371
MspA1I	CMGCKG	2 cut(s)	59, 140
MspR9I	CCNGG	2 cut(s)	352, 396
MvaI	CCWGG	2 cut(s)	352, 396
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	99, 268, 369, 373, 408
NlaIV	GGNNCC	1 cut(s)	392
NsiI	ATGCAT	2 cut(s)	97, 371
NspI	RCATGY	2 cut(s)	369, 408
PaeI	GCATGC	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	134
PciI	ACATGT	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	142, 325, 449
PleI	GAGTC	2 cut(s)	288, 393
PmaCI	CACGTG	1 cut(s)	300
PmlI	CACGTG	1 cut(s)	300
PpsI	GAGTC	2 cut(s)	288, 393
Ppu21I	YACGTR	1 cut(s)	300
PscI	ACATGT	1 cut(s)	404
PsiI	TTATAA	2 cut(s)	317, 422
Psp6I	CCWGG	2 cut(s)	350, 394
PspCI	CACGTG	1 cut(s)	300
PspGI	CCWGG	2 cut(s)	350, 394
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	59
SatI	GCNGC	3 cut(s)	141, 324, 448
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	2 cut(s)	288, 393
ScrFI	CCNGG	2 cut(s)	352, 396
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	462
SphI	GCATGC	1 cut(s)	369
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	350, 394
TaiI	ACGT	3 cut(s)	232, 302, 337
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	323, 447
VpaK11BI	GGWCC	1 cut(s)	462
XceI	RCATGY	2 cut(s)	369, 408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	2 cut(s)	97, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.