Rh5BG099700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006937
Physical Location & Seq
Reverse (-)
9119433 .. 9120383
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG099700.1

Sequence Viewer

Length: 951 bp
ATGGCATTTATTGATCCAAACGCCATTCACTTGGTTAGTGATCAGAGGCAAATTGCAGTTGACCCACAACGGCAAACTACCTATGTAATGAATGATGGATGGAAAAAGTTGTTTAACATTGACAATGATATTATTGCCACTGCGGCAGGTATTTCAGAAAGATTTCTGGCGTTTGCACGAACTGCATTGGATGTAAATAGAGCAGCTTTTGGTGGTGTCCAAGCTGCTGAACGTATATATCTCGTGGCGAGGGTGGTGTTGGCGTGCATAGATGACTTGGAGATGAGAACTGGACTCACATGCCTCGAGGACTTCATCATAGCTGGTTACTATTTTTTTCAGCCTAAAATTCTTAGAGTTAGATCCAGGAGTCTTGGTGGAATAGAAATTGAGACGCGGGTTGGATATCCTGTGATTATTGGAAGCGGCAGGGAATATGCTATGGAGTTTTATCATACTCATAGACATCTACAGCCTCAAACTCTTGGGGAGACATCCATAGGTGCTGCTTCAATTAAAGATGGCTTCACTGGCGGCCATGTGCAGAGTGTTCAAATTCCAATAGGTGGCAATGAAACCTTTTATGTGGATCCCCCACCGTCAGTGCTACAACTATTAGAGAGGGATTTAGGTGAGTATTGGCAGCTGCTTCAGAATGCTCTCTTCTTCGTGTGCTATCAATTCCCCTACGACGAAGATTTTGAACCAATACTTTTACAAGCGCTAACAGACCGATTCCCAGACTCGCACACCCACATCATTTCTCGTCAAAATGTACCTGTCAGAATCATGCATTTTGACAGTGTAATCTCTACCATGGAAGCTTGGCAAGATGTCAGAAATGGGATATCCTTGGAACTTTTTCCTAAGTGCTTCATACAGCTACAGTTCTTTGAGCCTATTGAGAAGAATATCAGGATACTACGGGGAGAAGAGCAGAGAGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.02

Weight (kDa)

5.21

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 566
AccII CGCG 1 cut(s) 397
AciI CCGC 4 cut(s) 143, 397, 426, 534
AclWI GGATC 4 cut(s) 8, 357, 584, 597
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 2 cut(s) 348, 555
AcuI CTGAAG 1 cut(s) 635
AfaI GTAC 1 cut(s) 777
AfeI AGCGCT 1 cut(s) 723
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 3 cut(s) 513, 554, 704
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 6 cut(s) 206, 224, 323, 646, 824, 883
AluI AGCT 6 cut(s) 206, 224, 323, 646, 824, 883
Alw26I GTCTC 2 cut(s) 386, 485
AlwI GGATC 4 cut(s) 8, 357, 584, 597
Ama87I CYCGRG 1 cut(s) 305
Aor51HI AGCGCT 1 cut(s) 723
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 5 cut(s) 203, 224, 506, 643, 646
ApoI RAATTY 2 cut(s) 348, 555
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
Asp700I GAANNNNTTC 2 cut(s) 162, 861
AspLEI GCGC 1 cut(s) 724
AsuHPI GGTGA 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 305
BamHI GGATCC 1 cut(s) 589
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 5 cut(s) 211, 215, 493, 633, 655
BccI CCATC 3 cut(s) 89, 93, 515
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 367
BciVI GTATCC 1 cut(s) 912
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 386, 485
BfmI CTRYAG 2 cut(s) 470, 884
BfoI RGCGCY 1 cut(s) 725
BfuAI ACCTGC 1 cut(s) 137
BfuI GTATCC 1 cut(s) 912
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 8 cut(s) 144, 204, 225, 427, 507, 535, 644, 647
BlsI GCNGC 8 cut(s) 145, 205, 226, 428, 508, 536, 645, 648
Bme1390I CCNGG 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 816, 852
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 295, 535
Bse3DI GCAATG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 816, 852
BseGI GGATG 3 cut(s) 104, 196, 494
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMI GCAATG 1 cut(s) 577
BseNI ACTGG 2 cut(s) 295, 535
BseXI GCAGC 5 cut(s) 211, 215, 493, 633, 655
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 397
BshFI GGCC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 386, 485
BsmBI CGTCTC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 305
Bsp143I GATC 4 cut(s) 13, 40, 362, 589
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 4 cut(s) 143, 397, 426, 534
BspANI GGCC 1 cut(s) 537
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 591
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 4 cut(s) 8, 357, 584, 597
BspQI GCTCTTC 1 cut(s) 927
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 2 cut(s) 295, 535
BssECI CCNNGG 2 cut(s) 816, 852
BssMI GATC 4 cut(s) 13, 40, 362, 589
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 816, 852
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 3 cut(s) 600, 803, 888
Bst6I CTCTTC 2 cut(s) 668, 927
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 353, 867
BstDSI CCRYGG 1 cut(s) 816
BstF5I GGATG 3 cut(s) 104, 196, 494
BstFNI CGCG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 4 cut(s) 16, 43, 365, 592
BstMAI GTCTC 2 cut(s) 386, 485
BstMBI GATC 4 cut(s) 13, 40, 362, 589
BstMWI GCNNNNNNNGC 3 cut(s) 143, 182, 531
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 2 cut(s) 470, 884
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 5 cut(s) 211, 215, 493, 633, 655
BstX2I RGATCY 2 cut(s) 362, 589
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 2 cut(s) 362, 589
BsuI GTATCC 1 cut(s) 912
BsuRI GGCC 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 3 cut(s) 104, 196, 494
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 138, 528, 609, 808
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 724
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 776
CviAII CATG 4 cut(s) 300, 539, 790, 817
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 2 cut(s) 353, 867
DpnI GATC 4 cut(s) 15, 42, 364, 591
DpnII GATC 4 cut(s) 13, 40, 362, 589
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 668, 927
EarI CTCTTC 2 cut(s) 668, 927
Eco130I CCWWGG 2 cut(s) 816, 852
Eco32I GATATC 2 cut(s) 407, 849
Eco47III AGCGCT 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 365
EcoRV GATATC 2 cut(s) 407, 849
EcoT14I CCWWGG 2 cut(s) 816, 852
EcoT22I ATGCAT 1 cut(s) 795
ErhI CCWWGG 2 cut(s) 816, 852
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 4 cut(s) 303, 542, 793, 820
FatI CATG 4 cut(s) 299, 538, 789, 816
FauI CCCGC 1 cut(s) 390
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 8 cut(s) 144, 204, 225, 427, 507, 535, 644, 647
FokI GGATG 3 cut(s) 111, 203, 481
Fsp4HI GCNGC 8 cut(s) 144, 204, 225, 427, 507, 535, 644, 647
GlaI GCGC 1 cut(s) 723
GluI GCNGC 8 cut(s) 144, 204, 225, 427, 507, 535, 644, 647
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 1 cut(s) 537
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 724
Hin1II CATG 4 cut(s) 303, 542, 793, 820
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 294, 370, 735, 743, 786
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 5 cut(s) 45, 157, 654, 785, 839
Hpy188III TCNNGA 1 cut(s) 916
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 695
HpyCH4III ACNGT 3 cut(s) 600, 803, 888
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 6 cut(s) 56, 176, 185, 267, 544, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 182, 531
HpyF3I CTNAG 2 cut(s) 353, 867
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 4 cut(s) 303, 542, 793, 820
HspAI GCGC 1 cut(s) 722
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 13, 40, 362, 589
LguI GCTCTTC 1 cut(s) 927
Lsp1109I GCAGC 5 cut(s) 211, 215, 493, 633, 655
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 15, 42, 364, 591
MboI GATC 4 cut(s) 13, 40, 362, 589
MboII GAAGA 5 cut(s) 655, 658, 707, 919, 944
MflI RGATCY 2 cut(s) 362, 589
MluCI AATT 6 cut(s) 51, 348, 387, 513, 555, 680
MlyI GAGTC 3 cut(s) 288, 379, 737
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 6 cut(s) 39, 243, 301, 314, 486, 615
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 2 cut(s) 162, 861
MseI TTAA 2 cut(s) 114, 516
MspA1I CMGCKG 1 cut(s) 646
MspR9I CCNGG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 143, 182, 531
NcoI CCATGG 1 cut(s) 816
NdeII GATC 4 cut(s) 13, 40, 362, 589
NlaIII CATG 4 cut(s) 303, 542, 793, 820
NlaIV GGNNCC 1 cut(s) 591
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 927
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 2 cut(s) 162, 861
PfeI GAWTC 2 cut(s) 735, 786
PflMI CCANNNNNTGG 1 cut(s) 566
PfoI TCCNGGA 1 cut(s) 365
PkrI GCNGC 8 cut(s) 145, 205, 226, 428, 508, 536, 645, 648
PleI GAGTC 3 cut(s) 288, 378, 737
PpsI GAGTC 3 cut(s) 288, 378, 737
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 591
PspXI VCTCGAGB 1 cut(s) 305
PsuI RGATCY 2 cut(s) 362, 589
PvuII CAGCTG 1 cut(s) 646
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 2 cut(s) 114, 516
SatI GCNGC 8 cut(s) 144, 204, 225, 427, 507, 535, 644, 647
Sau3AI GATC 4 cut(s) 13, 40, 362, 589
SchI GAGTC 3 cut(s) 288, 379, 737
ScrFI CCNGG 1 cut(s) 367
SfcI CTRYAG 2 cut(s) 470, 884
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 6 cut(s) 51, 348, 387, 513, 555, 680
SsiI CCGC 4 cut(s) 143, 397, 426, 534
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 2 cut(s) 816, 852
TaaI ACNGT 3 cut(s) 600, 803, 888
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 306
TaqII GACCGA 1 cut(s) 747
TasI AATT 6 cut(s) 51, 348, 387, 513, 555, 680
TauI GCSGC 3 cut(s) 146, 429, 537
TfiI GAWTC 2 cut(s) 735, 786
Tru1I TTAA 2 cut(s) 114, 516
Tru9I TTAA 2 cut(s) 114, 516
TscAI CASTG 4 cut(s) 145, 535, 609, 808
TseI GCWGC 5 cut(s) 203, 224, 506, 643, 646
TspDTI ATGAA 4 cut(s) 104, 304, 588, 865
TspRI CASTG 4 cut(s) 145, 535, 609, 808
Van91I CCANNNNNTGG 1 cut(s) 566
XapI RAATTY 2 cut(s) 348, 555
XceI RCATGY 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 162, 861
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.