Rh3BG094600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006937
Physical Location & Seq
Reverse (-)
7514160 .. 7519914
5755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG094600.1

Sequence Viewer

Length: 189 bp
ATGGCAAGTACAAGCTCCTCCCGAAATATCAAGGCTACCATCGAGGTTAACAGCCCGCGTGTGACTAATGTGGTGTTTTTTGATAGACCAACTCCTCATGTATGCAAACCTGGTGAAGAGACCATAATCGGTGCCGGCCCAGGAGATCCAGAGGACCTGCCAGAAGTTTTCAATAAAATGAACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.67

Weight (kDa)

5.12

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 1 cut(s) 58
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 140
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 2 cut(s) 109, 139
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 137, 154
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 131
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 111, 141
BcoDI GTCTC 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 111, 141
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 137, 154
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 111, 141
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 2 cut(s) 111, 141
BseDI CCNNGG 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 7, 84
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 138
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 111, 141
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 56, 136
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 145
BstNI CCWGG 2 cut(s) 111, 141
BstSCI CCNGG 2 cut(s) 109, 139
BstUI CGCG 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 138
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 56, 136
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 137, 154
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 15, 35, 54, 138
CviKI_1 RGCY 4 cut(s) 15, 35, 54, 138
CviQI GTAC 1 cut(s) 9
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 109, 139
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 103, 125
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 135
Hin1II CATG 1 cut(s) 101
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 21, 149
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 105
Hsp92II CATG 1 cut(s) 101
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 96, 123, 126, 148, 153, 162, 170, 174
MabI ACCWGGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 145
MnlI CCTC 4 cut(s) 28, 37, 105, 145
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 111, 141
MvaI CCWGG 2 cut(s) 111, 141
MvnI CGCG 1 cut(s) 58
NaeI GCCGGC 1 cut(s) 136
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 109, 139
PspGI CCWGG 2 cut(s) 109, 139
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 137, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 137, 154
ScrFI CCNGG 2 cut(s) 111, 141
SetI ASST 4 cut(s) 17, 48, 112, 159
SexAI ACCWGGT 1 cut(s) 109
SinI GGWCC 1 cut(s) 154
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 109, 139
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 8
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.