Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Reverse (-)

9659330 .. 9660280

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCATTTATTGATCCAAACGCCATTCACTTGGTTAGTGATCAGAGGCAAATTGCAGCTGACCTACAACGGCAAACTACATATGTAATGAATGATGGATGGAAAAAGTTTTATAACATTGACAATGATATTATTGTCACTGCGGCAGGTTCTTCTGAAAGATTTCTGGAGTTTGCAGAAGCTGCATTTGATGTAAATAGAGCAGCTTTTGGTGGTGTCCAAGCTGCTGAACGTGTATATCTTGTGGCGAGGGTGGTGTTGGCGTGCATAGATGACTTGGAGATGAGAACTGGACTCACATGCCTGGAGGACTTCATCATAGCTGGTTACTATTTTGTTCAGCCTCAAATTCTTAGAGTTAGATCCAGGAGTCTTGGTGGAATAGAAATTGAGACACGGATTGGATATCCTGTGGTTATTGGAAGCGGCAAGGAATATGCTATGGAGTTTTATCATACTCATAGATATCTACAGCCTCAAACTCTTGGGGAGACATCCATAGGTGCTGCTTCAATTAAAGATGGCTTCACTGGCGGCCATGTGCAGAGTGTTCAAATTCCAATAGGTGGCAATGAAACCTTTTATGTGGATCCCCCACCGTCAGTGCTACAACTATTAGAGAGGGATTTAGGTGAGTATTGGCAGCTGCTTCAGAATGCTCTCTTCTTCGTGTGCTATCAATTCCCGTACGACGAAGATTTTGAACCAATACTTTTACAAGCGCTAACAGAGCGATTCCCAGACTCGCACACTCACATCATTTCTCGTCGAAATTTACCTATCAGAATCATGAATTTTGACAGTGTAATCTCTACCATGGAAGCTTGGCAAGATGTCAGAAATGGGATATCCTTGGAACTTGTACTGGGGTTCACCATACGGCTACAGTTCTTTGAGCCTATTGAGAAGAATATCAGGATACTAAGGGGAGAAGAGCAGAGAGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.0

Weight (kDa)

4.89

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	566
AciI	CCGC	3 cut(s)	143, 426, 534
AclWI	GGATC	4 cut(s)	8, 357, 584, 597
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	4 cut(s)	348, 555, 772, 793
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	689, 864
AfeI	AGCGCT	1 cut(s)	723
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	513, 554, 704
AjnI	CCWGG	2 cut(s)	303, 365
AluBI	AGCT	7 cut(s)	59, 182, 206, 224, 323, 646, 824
AluI	AGCT	7 cut(s)	59, 182, 206, 224, 323, 646, 824
Alw26I	GTCTC	2 cut(s)	386, 485
AlwI	GGATC	4 cut(s)	8, 357, 584, 597
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor51HI	AGCGCT	1 cut(s)	723
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	7 cut(s)	56, 182, 203, 224, 506, 643, 646
ApoI	RAATTY	4 cut(s)	348, 555, 772, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	644, 865
BamHI	GGATCC	1 cut(s)	589
BbvI	GCAGC	7 cut(s)	68, 169, 211, 215, 493, 633, 655
BccI	CCATC	3 cut(s)	89, 93, 515
BceAI	ACGGC	2 cut(s)	86, 896
BciT130I	CCWGG	2 cut(s)	305, 367
BciVI	GTATCC	1 cut(s)	912
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	386, 485
BfmI	CTRYAG	2 cut(s)	470, 884
BfoI	RGCGCY	1 cut(s)	725
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	912
Bme1390I	CCNGG	2 cut(s)	305, 367
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	305, 367
BmrI	ACTGGG	1 cut(s)	875
BmuI	ACTGGG	1 cut(s)	875
BpmI	CTGGAG	2 cut(s)	188, 326
BsaJI	CCNNGG	2 cut(s)	816, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	3 cut(s)	295, 535, 870
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	305, 367
BseDI	CCNNGG	2 cut(s)	816, 852
BseGI	GGATG	2 cut(s)	104, 494
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	1 cut(s)	577
BseNI	ACTGG	3 cut(s)	295, 535, 870
BseXI	GCAGC	7 cut(s)	68, 169, 211, 215, 493, 633, 655
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	537
BsiWI	CGTACG	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	386, 485
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	13, 40, 362, 589
Bsp19I	CCATGG	1 cut(s)	816
BspACI	CCGC	3 cut(s)	143, 426, 534
BspANI	GGCC	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	4 cut(s)	8, 357, 584, 597
BspQI	GCTCTTC	1 cut(s)	927
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	3 cut(s)	295, 535, 870
BssECI	CCNNGG	2 cut(s)	816, 852
BssMI	GATC	4 cut(s)	13, 40, 362, 589
BssT1I	CCWWGG	2 cut(s)	816, 852
Bst2UI	CCWGG	2 cut(s)	305, 367
Bst4CI	ACNGT	3 cut(s)	600, 803, 888
Bst6I	CTCTTC	2 cut(s)	668, 927
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	353, 923
BstDSI	CCRYGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	104, 494
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	4 cut(s)	16, 43, 365, 592
BstMAI	GTCTC	2 cut(s)	386, 485
BstMBI	GATC	4 cut(s)	13, 40, 362, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 531, 730
BstNI	CCWGG	2 cut(s)	305, 367
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	303, 365
BstSFI	CTRYAG	2 cut(s)	470, 884
BstV1I	GCAGC	7 cut(s)	68, 169, 211, 215, 493, 633, 655
BstX2I	RGATCY	2 cut(s)	362, 589
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	2 cut(s)	362, 589
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	104, 494
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	4 cut(s)	138, 528, 609, 808
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	688, 863
CviAII	CATG	4 cut(s)	300, 539, 790, 817
CviQI	GTAC	2 cut(s)	688, 863
DdeI	CTNAG	2 cut(s)	353, 923
DpnI	GATC	4 cut(s)	15, 42, 364, 591
DpnII	GATC	4 cut(s)	13, 40, 362, 589
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	668, 927
EarI	CTCTTC	2 cut(s)	668, 927
Eco130I	CCWWGG	2 cut(s)	816, 852
Eco32I	GATATC	3 cut(s)	407, 467, 849
Eco47III	AGCGCT	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	303, 365
EcoRV	GATATC	3 cut(s)	407, 467, 849
EcoT14I	CCWWGG	2 cut(s)	816, 852
ErhI	CCWWGG	2 cut(s)	816, 852
FaeI	CATG	4 cut(s)	303, 542, 793, 820
FatI	CATG	4 cut(s)	299, 538, 789, 816
FauNDI	CATATG	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	2 cut(s)	111, 481
GlaI	GCGC	1 cut(s)	723
GsuI	CTGGAG	2 cut(s)	188, 326
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	537
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	4 cut(s)	303, 542, 793, 820
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	5 cut(s)	294, 370, 735, 743, 786
HphI	GGTGA	2 cut(s)	644, 865
Hpy166II	GTNNAC	1 cut(s)	873
Hpy188I	TCNGA	5 cut(s)	45, 157, 654, 785, 839
Hpy188III	TCNNGA	3 cut(s)	167, 790, 916
Hpy8I	GTNNAC	1 cut(s)	873
Hpy99I	CGWCG	2 cut(s)	695, 771
HpyCH4III	ACNGT	3 cut(s)	600, 803, 888
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	56, 176, 185, 267, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 531, 730
HpyF3I	CTNAG	2 cut(s)	353, 923
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	303, 542, 793, 820
HspAI	GCGC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	13, 40, 362, 589
LguI	GCTCTTC	1 cut(s)	927
Lsp1109I	GCAGC	7 cut(s)	68, 169, 211, 215, 493, 633, 655
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	136, 326
MalI	GATC	4 cut(s)	15, 42, 364, 591
MboI	GATC	4 cut(s)	13, 40, 362, 589
MboII	GAAGA	6 cut(s)	144, 655, 658, 707, 919, 944
MflI	RGATCY	2 cut(s)	362, 589
MluCI	AATT	8 cut(s)	51, 348, 387, 513, 555, 680, 772, 793
MlyI	GAGTC	3 cut(s)	288, 379, 737
MnlI	CCTC	6 cut(s)	39, 243, 301, 354, 486, 615
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	2 cut(s)	59, 646
MspR9I	CCNGG	2 cut(s)	305, 367
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	2 cut(s)	305, 367
MwoI	GCNNNNNNNGC	3 cut(s)	182, 531, 730
NcoI	CCATGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	4 cut(s)	13, 40, 362, 589
NlaIII	CATG	4 cut(s)	303, 542, 793, 820
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	303
PagI	TCATGA	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	735, 786
Pfl23II	CGTACG	1 cut(s)	687
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	365
PleI	GAGTC	3 cut(s)	288, 378, 737
PpsI	GAGTC	3 cut(s)	288, 378, 737
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	303, 365
PspGI	CCWGG	2 cut(s)	303, 365
PspLI	CGTACG	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	362, 589
PvuII	CAGCTG	2 cut(s)	59, 646
RsaI	GTAC	2 cut(s)	689, 864
RsaNI	GTAC	2 cut(s)	688, 863
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	13, 40, 362, 589
SchI	GAGTC	3 cut(s)	288, 379, 737
ScrFI	CCNGG	2 cut(s)	305, 367
SfcI	CTRYAG	2 cut(s)	470, 884
Sse9I	AATT	8 cut(s)	51, 348, 387, 513, 555, 680, 772, 793
SsiI	CCGC	3 cut(s)	143, 426, 534
StyD4I	CCNGG	2 cut(s)	303, 365
StyI	CCWWGG	2 cut(s)	816, 852
TaaI	ACNGT	3 cut(s)	600, 803, 888
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	769
TasI	AATT	8 cut(s)	51, 348, 387, 513, 555, 680, 772, 793
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	3 cut(s)	146, 429, 537
TfiI	GAWTC	2 cut(s)	735, 786
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	145, 535, 609, 808
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	7 cut(s)	56, 182, 203, 224, 506, 643, 646
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	4 cut(s)	104, 304, 588, 806
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	4 cut(s)	145, 535, 609, 808
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	348, 555, 772, 793
XceI	RCATGY	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.