Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006937

Physical Location & Seq

Genomic Coordinates Forward (+)

12170980 .. 12173308

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGCTTCCTCTTCAGGGATATGGATATCAACAGCTATGATATCGAAGAAGAGGAGAGTCGGGAGACTAACATGGTACCTATGGCGGTTAATGATGTTGTACAAGTGAGGTGCAATCTTGTTGAGGCATATGCCGTCACTCTTCCATCACTCGGTTTGACAGTCAAGGTTTCTTTTGTACTATTTCCTCTTCATAATCAGATGTTGGAGGACCTATTTCCTAACTCAAAGACACATGTTATTTCAATTCAAACTACTGTGATCAGAATTATCAATTTCACTGATGCTGGAGCTGCGGAGAGAGCGGCAAGGGACTATCCTTTTGGGATACGGCTAGCAGACCCGAAGAATGAGAATCAGTTTATTGAGGCACTGTTTTATAGGCCTAACTTAGAATTACTTCATAATTTCATGCTACTAGAGCAGGGCTCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.62

Weight (kDa)

4.77

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08080
rosa_chinensis	RchiOBHm_Chr3g0457771
rosa_laevigata	RLG00000009522 RLG00000025118
rosa_multiflora	Rmu_sc0012092.1_g000004 Rmu_sc0012092.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063300 Rroxscaffold_1G00063360 Rroxscaffold_1G00063370 Rroxscaffold_6G00421500
rosa_samantha	Rh3AG092100 Rh3BG094600 Rh3CG086800 Rh3CG087000 Rh4AG070100 Rh4BG067900 Rh4CG075800 Rh5AG102600 Rh5BG098900 Rh5BG099300 Rh5BG099700 Rh5CG111000 Rh5DG098100 Rh5DG098200
rosa_wichuraiana	Rw0G012270 Rw5G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	305
AciI	CCGC	3 cut(s)	86, 296, 305
AfaI	GTAC	3 cut(s)	78, 102, 180
AfiI	CCNNNNNNNGG	2 cut(s)	16, 152
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	246, 251
AluBI	AGCT	3 cut(s)	6, 36, 293
AluI	AGCT	3 cut(s)	6, 36, 293
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	2 cut(s)	119, 347
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	335, 419
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	294, 306
BlsI	GCNGC	2 cut(s)	295, 307
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	78, 430
BmsI	GCATC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	338
BplI	GAGNNNNNCTC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 152
BseLI	CCNNNNNNNGG	2 cut(s)	16, 152
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	16, 152
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	86, 296, 305
BspANI	GGCC	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	78, 430
BspOI	GCTAGC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	100
BssMI	GATC	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	163, 259, 375
Bst6I	CTCTTC	4 cut(s)	17, 45, 147, 195
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 302, 421
BstNSI	RCATGY	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	385
BtsIMutI	CAGTG	3 cut(s)	279, 371, 433
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	77, 101, 179
CviAII	CATG	3 cut(s)	73, 236, 412
CviJI	RGCY	6 cut(s)	6, 36, 293, 334, 385, 429
CviKI_1	RGCY	6 cut(s)	6, 36, 293, 334, 385, 429
CviQI	GTAC	3 cut(s)	77, 101, 179
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	17, 45, 147, 195
EarI	CTCTTC	4 cut(s)	17, 45, 147, 195
Eco147I	AGGCCT	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	2 cut(s)	28, 43
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRV	GATATC	2 cut(s)	28, 43
EcoT38I	GRGCYC	1 cut(s)	431
FaeI	CATG	3 cut(s)	76, 239, 415
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	72, 235, 411
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	294, 306
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	294, 306
FspBI	CTAG	2 cut(s)	335, 419
GluI	GCNGC	2 cut(s)	294, 306
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	76, 239, 415
HinfI	GANTC	2 cut(s)	58, 355
Hpy188I	TCNGA	2 cut(s)	201, 266
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4III	ACNGT	3 cut(s)	163, 259, 375
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 302, 421
HpyF3I	CTNAG	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	76, 239, 415
KpnI	GGTACC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	290, 434
LpnPI	CCDG	2 cut(s)	273, 410
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	335, 419
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	263
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	1 cut(s)	261
MboII	GAAGA	6 cut(s)	4, 59, 62, 134, 182, 358
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	5 cut(s)	246, 267, 274, 395, 406
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	20, 46, 102, 118, 198, 202, 361
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	293, 302, 421
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	261
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	76, 239, 415
NlaIV	GGNNCC	2 cut(s)	78, 430
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	385
PciI	ACATGT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	295, 307
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	78, 430
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
RsaI	GTAC	3 cut(s)	78, 102, 180
RsaNI	GTAC	3 cut(s)	77, 101, 179
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	294, 306
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	7 cut(s)	8, 38, 82, 113, 171, 216, 295
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	5 cut(s)	246, 267, 274, 395, 406
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	3 cut(s)	86, 296, 305
SspMI	CTAG	2 cut(s)	335, 419
StuI	AGGCCT	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	163, 259, 375
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	246, 267, 274, 395, 406
TatI	WGTACW	2 cut(s)	100, 178
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	286, 378
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	182, 392, 400
TspRI	CASTG	2 cut(s)	286, 378
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	335, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.