Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002297

Physical Location & Seq

Genomic Coordinates Reverse (-)

8253821 .. 8254887

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCCTCTGTGGAGTTGAATACAGCTCATTCCAACATGATGTTCTCCATTATAGATAGCAGAATGGGTTCGTATCCATCAGAATGTGTTCAGAGGTTTGTAGCTTTGGCCCTCAGATGTTGCCATGATAAACAAGACGACCGGCCATCAATGTTGGATGTGGTGAGGGAGCTCGAGAACATAATCAAACTCATGCCGGGAGCTGAAACAATGTTTTCACCATCTGGTTCCTCATACACTGAAAAATCATTAACTTCATCATCGACTTTTACTGGGGACCCATATATGTCCTCCTCCAACGTGGAAGGAAGTGATCTAACCAGTGGTGTAATCCCTACCATCTCGCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.78

Weight (kDa)

4.82

Isoelectric Point (pI)

64.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950
fragaria_vesca	FvH4_6g09451 FvH4_6g09451 FvH4_6g09470 FvH4_6g09470
malus_domestica	MD04G1177400.v1.1 MD12G1192800.v1.1
prunus_persica	Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297100_v2.0.a1 Prupe.6G297200_v2.0.a1 Prupe.6G297400_v2.0.a1
pyrus_communis	pycom12g17950
rosa_chinensis	RchiOBHm_Chr3g0459941 RchiOBHm_Chr3g0459991 RchiOBHm_Chr3g0460021 RchiOBHm_Chr3g0460051
rosa_laevigata	RLG00000025048 RLG00000025050
rosa_multiflora	Rmu_sc0000240.1_g000049 Rmu_sc0000240.1_g000076 Rmu_sc0013658.1_g000003 Rmu_sc0030602.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419890 Rroxscaffold_6G00419900
rosa_rugosa	Rorug03G0038900 Rorug03G0039100
rosa_samantha	Rh3BG100400 Rh3BG100600 Rh3CG102200 Rh3CG102400 Rh3CG102700 Rh3DG101900
rosa_wichuraiana	Rw3G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	26, 104, 172, 203
AluI	AGCT	4 cut(s)	26, 104, 172, 203
Alw21I	GWGCWC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	108, 143
Asp700I	GAANNNNTTC	2 cut(s)	67, 87
AspS9I	GGNCC	2 cut(s)	109, 277
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	175, 210
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	4 cut(s)	85, 154, 229, 347
BciVI	GTATCC	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	109, 277
BmiI	GGNNCC	3 cut(s)	229, 278, 279
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	277, 321
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	277, 321
BseRI	GAGGAG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	110, 145
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	142, 197
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	110, 145
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	110, 145
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	229, 278, 279
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	277, 321
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMCI	CGRYCG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	110, 145
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	237, 328
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	109, 277
CviAII	CATG	3 cut(s)	37, 125, 193
CviJI	RGCY	6 cut(s)	26, 104, 110, 145, 172, 203
CviKI_1	RGCY	6 cut(s)	26, 104, 110, 145, 172, 203
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	40, 128, 196
FaiI	YATR	9 cut(s)	38, 53, 126, 182, 194, 235, 283, 285, 287
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	36, 124, 192
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	110, 145
HapII	CCGG	2 cut(s)	142, 197
Hin1II	CATG	3 cut(s)	40, 128, 196
HpaII	CCGG	2 cut(s)	142, 197
HphI	GGTGA	2 cut(s)	175, 210
Hpy188I	TCNGA	3 cut(s)	82, 93, 116
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	40, 128, 196
KflI	GGGWCCC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	169, 200
LpnPI	CCDG	5 cut(s)	155, 210, 210, 258, 334
MaeII	ACGT	1 cut(s)	300
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	174
MmeI	TCCRAC	3 cut(s)	57, 135, 321
MnlI	CCTC	7 cut(s)	16, 87, 122, 159, 241, 301, 304
MroXI	GAANNNNTTC	2 cut(s)	67, 87
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	2 cut(s)	142, 197
MspR9I	CCNGG	1 cut(s)	198
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	40, 128, 196
NlaIV	GGNNCC	3 cut(s)	229, 278, 279
PaeR7I	CTCGAG	1 cut(s)	173
PdmI	GAANNNNTTC	2 cut(s)	67, 87
PpuMI	RGGWCCY	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	229, 278, 279
PspPI	GGNCC	2 cut(s)	109, 277
PspPPI	RGGWCCY	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	109, 277
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	28, 98, 106, 174, 205, 303
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	174, 263
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	244, 328
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	244, 328
VpaK11BI	GGWCC	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	67, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.