Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030602.1

Orthogroup ID

OG0002297

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 599

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030602.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgagattacgtattgcattgggttccgccaaaggaattctgtatctccataccgaggcaaatcctcctatattccaccgagatattaaagccacaaatatacttttggactccaactatgtcgctaaggtggctgattttggactctcacgactagcacctgtccagaatgatgaagggactggccctgcatacgtatctacagtcgtgaaaggaacaccggggtacctggatccagagtatttcttgaccagaaagttaacagacaaaagcgatgtctatagccttggaattgtgtttctggagctcttgactggtgtgctgccaatatcacatggcaaaaacattgttcgcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

7.99

Isoelectric Point (pI)

19.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950
fragaria_vesca	FvH4_6g09451 FvH4_6g09451 FvH4_6g09470 FvH4_6g09470
malus_domestica	MD04G1177400.v1.1 MD12G1192800.v1.1
prunus_persica	Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297100_v2.0.a1 Prupe.6G297200_v2.0.a1 Prupe.6G297400_v2.0.a1
pyrus_communis	pycom12g17950
rosa_chinensis	RchiOBHm_Chr3g0459941 RchiOBHm_Chr3g0459991 RchiOBHm_Chr3g0460021 RchiOBHm_Chr3g0460051
rosa_laevigata	RLG00000025048 RLG00000025050
rosa_multiflora	Rmu_sc0000240.1_g000049 Rmu_sc0000240.1_g000076 Rmu_sc0013658.1_g000003 Rmu_sc0030602.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419890 Rroxscaffold_6G00419900
rosa_rugosa	Rorug03G0038900 Rorug03G0039100
rosa_samantha	Rh3BG100400 Rh3BG100600 Rh3CG102200 Rh3CG102400 Rh3CG102700 Rh3DG101900
rosa_wichuraiana	Rw3G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	1 cut(s)	354
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	227, 240
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp718I	GGTACC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	201, 280
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	222, 230
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	25, 227, 234
BmrFI	CCNGG	2 cut(s)	222, 230
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	11, 196
BsaJI	CCNNGG	3 cut(s)	54, 221, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	187, 319
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	54, 221, 286
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	187, 319
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	232
Bsp68I	TCGCGA	1 cut(s)	354
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	25, 227, 234
BspPI	GGATC	2 cut(s)	227, 240
BspT107I	GGYRCC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	187, 319
BssECI	CCNNGG	3 cut(s)	54, 221, 286
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	2 cut(s)	11, 196
BstDEI	CTNAG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	220, 228
BstSFI	CTRYAG	2 cut(s)	201, 280
BstSNI	TACGTA	2 cut(s)	11, 196
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	288
BtuMI	TCGCGA	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	5 cut(s)	92, 134, 186, 285, 307
CviKI_1	RGCY	5 cut(s)	92, 134, 186, 285, 307
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	307
Eco105I	TACGTA	2 cut(s)	11, 196
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	338
FaiI	YATR	7 cut(s)	51, 71, 101, 120, 193, 282, 336
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	110, 144
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	8 cut(s)	150, 166, 208, 236, 247, 302, 310, 353
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	10, 195
HpyCH4V	TGCA	2 cut(s)	17, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	10, 195
Hsp92II	CATG	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	10, 195
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	36, 291
MlyI	GAGTC	2 cut(s)	104, 138
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	49, 75
MseI	TTAA	2 cut(s)	87, 260
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	222, 230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	3 cut(s)	25, 227, 234
NruI	TCGCGA	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	104, 138
PpsI	GAGTC	2 cut(s)	104, 138
Ppu21I	YACGTR	2 cut(s)	11, 196
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	25, 227, 234
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	232
RruI	TCGCGA	1 cut(s)	354
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	87, 260
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	104, 138
ScrFI	CCNGG	2 cut(s)	222, 230
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	6 cut(s)	13, 132, 163, 198, 231, 309
SfcI	CTRYAG	2 cut(s)	201, 280
SnaBI	TACGTA	2 cut(s)	11, 196
Sse9I	AATT	2 cut(s)	36, 291
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	220, 228
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	13, 198
TasI	AATT	2 cut(s)	36, 291
Tru1I	TTAA	2 cut(s)	87, 260
Tru9I	TTAA	2 cut(s)	87, 260
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	189
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.