Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002297

Physical Location & Seq

Genomic Coordinates Reverse (-)

3038410 .. 3039958

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0038900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCCAAGAACAGCCGAGGAGGCCCGTCGAGGATGAGCAGCAGGGGGGTGAACAATACGGCGACTCTTATCTCGAGCTTGCGGCGAAGGTGGTGGCTGATAAGGATGCAGACTCCGCCGTGCAGAGCCCCGTCGGTCTGAAGCTTATTAATGCAGATGACTTCAGCACTAAGAAGACTGAACATCCCGGACGGCGAGTTGTTCCCGAGTCAGTCGGCGGACAGGGTACGAGTCAAAATTCAAGGCAAGTAGATGAAAAGGAAAGGAAAATCTGTGAATTAGCTAAGGTTGTTGCGCAATACAGCCAGAGAGGTCCTTTGTCAGCACTAATAACCGGTCAACCTATTGGCGGTGCTAGCAGTCAAATCACCATCGGCGAAGCCTTGGAGGCGACCGCCATGACGGCTGGACAGAAGCCGGTGGAGTGGAGTGATGCGGCCGCAATTCAAGCCGCCGAGGTTAGAGCCACTGGCCGAACCAACATTGTACCCGGTGGTGTCGCTGCCGCAGCTCAATCGGCGGCAACTCTCAATGCTAGGGCTACGCGTGACGAGGACAAGACAAAACTTGCTGATATCCTTGCGGATGCAACTTCAAAATTACCGGCAGACAAACCGGCGACACGAAGGGATGCTGAGGGGGTGACGGGTGCAGAAATGCGAAATGATCCATATCTGACCACCCATCCCACCGGTGTGGCAGCTTCGGTGGCGGCCGCTGCTAGGCTCAACCAGGGTAATAGCATTGAAGGAACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

26.39

Weight (kDa)

5.26

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	123 - 181	1.2e-22	Seed maturation protein
SMP	PF04927	188 - 245	5.2e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950
fragaria_vesca	FvH4_6g09451 FvH4_6g09451 FvH4_6g09470 FvH4_6g09470
malus_domestica	MD04G1177400.v1.1 MD12G1192800.v1.1
prunus_persica	Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297100_v2.0.a1 Prupe.6G297200_v2.0.a1 Prupe.6G297400_v2.0.a1
pyrus_communis	pycom12g17950
rosa_chinensis	RchiOBHm_Chr3g0459941 RchiOBHm_Chr3g0459991 RchiOBHm_Chr3g0460021 RchiOBHm_Chr3g0460051
rosa_laevigata	RLG00000025048 RLG00000025050
rosa_multiflora	Rmu_sc0000240.1_g000049 Rmu_sc0000240.1_g000076 Rmu_sc0013658.1_g000003 Rmu_sc0030602.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419890 Rroxscaffold_6G00419900
rosa_rugosa	Rorug03G0038900 Rorug03G0039100
rosa_samantha	Rh3BG100400 Rh3BG100600 Rh3CG102200 Rh3CG102400 Rh3CG102700 Rh3DG101900
rosa_wichuraiana	Rw3G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccII	CGCG	1 cut(s)	547
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	3 cut(s)	438, 472, 714
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	148, 161
AfaI	GTAC	2 cut(s)	229, 489
AfiI	CCNNNNNNNGG	2 cut(s)	350, 723
AflIII	ACRYGT	1 cut(s)	545
AgeI	ACCGGT	2 cut(s)	335, 692
AgsI	TTSAA	4 cut(s)	243, 449, 597, 749
AjnI	CCWGG	1 cut(s)	732
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	5 cut(s)	79, 145, 284, 512, 704
AluI	AGCT	5 cut(s)	79, 145, 284, 512, 704
AlwI	GGATC	1 cut(s)	662
Ama87I	CYCGRG	2 cut(s)	74, 206
AoxI	GGCC	4 cut(s)	23, 438, 472, 714
ApeKI	GCWGC	5 cut(s)	40, 503, 509, 701, 719
ApoI	RAATTY	1 cut(s)	238
AseI	ATTAAT	1 cut(s)	150
AsiGI	ACCGGT	2 cut(s)	335, 692
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	24, 314
AsuC2I	CCSGG	2 cut(s)	189, 492
AsuHPI	GGTGA	3 cut(s)	62, 361, 655
AsuNHI	GCTAGC	1 cut(s)	356
AvaI	CYCGRG	2 cut(s)	74, 206
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	5 cut(s)	52, 490, 521, 706, 713
BccI	CCATC	2 cut(s)	380, 693
BceAI	ACGGC	4 cut(s)	76, 104, 209, 420
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	1 cut(s)	734
BcnI	CCSGG	2 cut(s)	189, 492
BfaI	CTAG	3 cut(s)	357, 537, 723
BglI	GCCNNNNNGGC	3 cut(s)	22, 389, 404
Bme1390I	CCNGG	3 cut(s)	189, 492, 734
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	2 cut(s)	74, 206
BmgT120I	GGNCC	2 cut(s)	24, 314
BmrFI	CCNGG	3 cut(s)	189, 492, 734
BmsI	GCATC	4 cut(s)	97, 424, 577, 622
BmtI	GCTAGC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	285, 636
BpuMI	CCSGG	2 cut(s)	189, 492
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	4 cut(s)	17, 384, 456, 733
BsaWI	WCCGGW	2 cut(s)	335, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 723
Bse118I	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	4 cut(s)	17, 384, 456, 733
BseGI	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	2 cut(s)	350, 723
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	2 cut(s)	438, 714
BseXI	GCAGC	5 cut(s)	52, 490, 521, 706, 713
BsgI	GTGCAG	2 cut(s)	143, 672
Bsh1236I	CGCG	1 cut(s)	547
Bsh1285I	CGRYCG	3 cut(s)	396, 441, 717
BshFI	GGCC	4 cut(s)	25, 440, 474, 716
BshTI	ACCGGT	2 cut(s)	335, 692
BsiEI	CGRYCG	3 cut(s)	396, 441, 717
BsiHKCI	CYCGRG	2 cut(s)	74, 206
BsiSI	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
BslI	CCNNNNNNNGG	2 cut(s)	350, 723
BsnI	GGCC	4 cut(s)	25, 440, 474, 716
BsoBI	CYCGRG	2 cut(s)	74, 206
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	667
BspANI	GGCC	4 cut(s)	25, 440, 474, 716
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	662
BsrFI	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
BssECI	CCNNGG	4 cut(s)	17, 384, 456, 733
BssMI	GATC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	81, 358
BstDEI	CTNAG	3 cut(s)	171, 285, 636
BstF5I	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BstFNI	CGCG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	670
BstMBI	GATC	1 cut(s)	667
BstMCI	CGRYCG	3 cut(s)	396, 441, 717
BstNI	CCWGG	1 cut(s)	734
BstSCI	CCNGG	3 cut(s)	187, 490, 732
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	5 cut(s)	52, 490, 521, 706, 713
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstZI	CGGCCG	2 cut(s)	438, 714
BsuRI	GGCC	4 cut(s)	25, 440, 474, 716
BtsCI	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	81, 358
CciNI	GCGGCCGC	2 cut(s)	438, 714
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
Cfr13I	GGNCC	2 cut(s)	24, 314
Csp6I	GTAC	2 cut(s)	228, 488
CspAI	ACCGGT	2 cut(s)	335, 692
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	2 cut(s)	228, 488
DdeI	CTNAG	3 cut(s)	171, 285, 636
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
EaeI	YGGCCR	3 cut(s)	438, 472, 714
EagI	CGGCCG	2 cut(s)	438, 714
EciI	GGCGGA	2 cut(s)	106, 234
EclXI	CGGCCG	2 cut(s)	438, 714
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	314
Eco52I	CGGCCG	2 cut(s)	438, 714
Eco57I	CTGAAG	2 cut(s)	148, 161
Eco88I	CYCGRG	2 cut(s)	74, 206
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	732
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	403
FaiI	YATR	2 cut(s)	401, 673
FatI	CATG	1 cut(s)	399
FokI	GGATG	6 cut(s)	47, 119, 171, 599, 644, 672
FriOI	GRGCYC	1 cut(s)	131
FspBI	CTAG	3 cut(s)	357, 537, 723
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	25, 440, 474, 716
HapII	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	4 cut(s)	65, 113, 209, 232
HpaII	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
HphI	GGTGA	3 cut(s)	62, 361, 655
Hpy166II	GTNNAC	2 cut(s)	53, 341
Hpy188I	TCNGA	2 cut(s)	141, 678
Hpy188III	TCNNGA	2 cut(s)	74, 206
Hpy8I	GTNNAC	2 cut(s)	53, 341
Hpy99I	CGWCG	2 cut(s)	32, 137
HpyAV	CCTTC	3 cut(s)	82, 621, 743
HpyCH4V	TGCA	5 cut(s)	110, 124, 155, 590, 653
HpyF3I	CTNAG	3 cut(s)	171, 285, 636
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	667
Lsp1109I	GCAGC	5 cut(s)	52, 490, 521, 706, 713
LweI	GCATC	4 cut(s)	97, 424, 577, 622
MaeI	CTAG	3 cut(s)	357, 537, 723
MaeIII	GTNAC	2 cut(s)	548, 643
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	4 cut(s)	238, 278, 444, 599
MluI	ACGCGT	1 cut(s)	545
MlyI	GAGTC	4 cut(s)	59, 107, 218, 241
MnlI	CCTC	8 cut(s)	12, 15, 25, 305, 382, 451, 547, 631
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
MspR9I	CCNGG	3 cut(s)	189, 492, 734
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	1 cut(s)	547
NciI	CCSGG	2 cut(s)	189, 492
NdeII	GATC	1 cut(s)	667
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	403
NmeAIII	GCCGAG	2 cut(s)	42, 481
NmuCI	GTSAC	2 cut(s)	548, 643
NotI	GCGGCCGC	2 cut(s)	438, 714
NsbI	TGCGCA	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	187
PinAI	ACCGGT	2 cut(s)	335, 692
PleI	GAGTC	4 cut(s)	59, 107, 217, 240
PpsI	GAGTC	4 cut(s)	59, 107, 217, 240
PpuMI	RGGWCCY	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	732
PspGI	CCWGG	1 cut(s)	732
PspPI	GGNCC	2 cut(s)	24, 314
PspPPI	RGGWCCY	1 cut(s)	314
RsaI	GTAC	2 cut(s)	229, 489
RsaNI	GTAC	2 cut(s)	228, 488
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	2 cut(s)	24, 314
SchI	GAGTC	4 cut(s)	59, 107, 218, 241
ScrFI	CCNGG	3 cut(s)	189, 492, 734
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	4 cut(s)	97, 424, 577, 622
Sfr274I	CTCGAG	1 cut(s)	74
SgrAI	CRCCGGYG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	238, 278, 444, 599
SspMI	CTAG	3 cut(s)	357, 537, 723
StyD4I	CCNGG	3 cut(s)	187, 490, 732
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	2 cut(s)	30, 75
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	238, 278, 444, 599
TauI	GCSGC	8 cut(s)	86, 440, 443, 455, 509, 524, 716, 719
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	548, 643
TseI	GCWGC	5 cut(s)	40, 503, 509, 701, 719
Tsp45I	GTSAC	2 cut(s)	548, 643
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	3 cut(s)	357, 537, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.