Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0002297

Physical Location & Seq

Genomic Coordinates Reverse (-)

258966 .. 261123

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgtctgaatatcatcctggaaagtggtatgaagccttatctctcttttcagcgtggaagatttctatgagaattgagggtgtaaaggcgttcactttcaaagaaatgacactagccaccaggaactttgatagtgcatctcaacttggacaaggaggctatgggaaagtttataaaggtatcttatctgataccacagctgtagccataaagcgtgcagaagcaggatccctacagggtgaaggagaattcttgaccgagatacaattattatcaaggctacaccatcgaaacttagtctctttggtaggatactgtgaagaagaaggggagcagatgttggtttatgagttcatgcctaatggtaccttacgtgactggctttctgataaaaccaagggaagcctggacttcagtatgagattacgtattgcattgggttcagccaaaggaattctttatctccataccgaggcaaatcctcctatattccaccgagatattaaagccacaaatatacttttggactccaactatgtcgctaaggtggctgattttggactctcacgactagcacctgtccagaatgatgaagggactggccctgcatacgtatctacagtcgtgaaaggaacaccggggtacctggatccagagtatttcttgaccagaaagttaacagacaaaagcgatgtctatagccttggaattgtgtttctggagctcttgactggtgtgctgccaatatcacatggcaaaaacattgttcgcgaggtgaatatggctcatcagtcaggcttgatgttctccattatagatagcagaatgggttcgtatccatctgaatgtgttcagaggtttgtagctttggccctcagatgttgccatgataaacaagacgaccggccatcgatgttggatgtggtgagggagctcgagaacataatcaaactcatgccgggagctgaaacaatgttttcaccatctggttcctcatacactgaaaaatcattaacttcatcatcgacttttactggggacccatatatgtcctcctccaacgtggaaggaagtgatctaaccagtggtgtaatccctaccatctcgcctcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

40.97

Weight (kDa)

5.82

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950
fragaria_vesca	FvH4_6g09451 FvH4_6g09451 FvH4_6g09470 FvH4_6g09470
malus_domestica	MD04G1177400.v1.1 MD12G1192800.v1.1
prunus_persica	Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297100_v2.0.a1 Prupe.6G297200_v2.0.a1 Prupe.6G297400_v2.0.a1
pyrus_communis	pycom12g17950
rosa_chinensis	RchiOBHm_Chr3g0459941 RchiOBHm_Chr3g0459991 RchiOBHm_Chr3g0460021 RchiOBHm_Chr3g0460051
rosa_laevigata	RLG00000025048 RLG00000025050
rosa_multiflora	Rmu_sc0000240.1_g000049 Rmu_sc0000240.1_g000076 Rmu_sc0013658.1_g000003 Rmu_sc0030602.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419890 Rroxscaffold_6G00419900
rosa_rugosa	Rorug03G0038900 Rorug03G0039100
rosa_samantha	Rh3BG100400 Rh3BG100600 Rh3CG102200 Rh3CG102400 Rh3CG102700 Rh3DG101900
rosa_wichuraiana	Rw3G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
Acc65I	GGTACC	2 cut(s)	365, 642
AccB1I	GGYRCC	2 cut(s)	365, 642
AccII	CGCG	1 cut(s)	771
AclWI	GGATC	4 cut(s)	222, 235, 644, 657
AcoI	YGGCCR	1 cut(s)	905
AcsI	RAATTY	2 cut(s)	248, 453
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	367, 644
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	4 cut(s)	16, 119, 405, 645
AluBI	AGCT	5 cut(s)	200, 724, 866, 934, 965
AluI	AGCT	5 cut(s)	200, 724, 866, 934, 965
Alw21I	GWGCWC	2 cut(s)	726, 936
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	4 cut(s)	222, 235, 644, 657
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	601, 870, 905
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	2 cut(s)	248, 453
ArsI	GACNNNNNNTTYG	2 cut(s)	678, 710
Asp700I	GAANNNNTTC	2 cut(s)	829, 849
Asp718I	GGTACC	2 cut(s)	365, 642
AspS9I	GGNCC	3 cut(s)	602, 871, 1039
AsuC2I	CCSGG	2 cut(s)	639, 960
AsuHPI	GGTGA	4 cut(s)	251, 787, 937, 972
AvaI	CYCGRG	1 cut(s)	935
AvaII	GGWCC	1 cut(s)	1039
BaeI	ACNNNNGTAYC	2 cut(s)	626, 659
BamHI	GGATCC	2 cut(s)	227, 649
BanI	GGYRCC	2 cut(s)	365, 642
BanII	GRGCYC	2 cut(s)	726, 936
Bbv12I	GWGCWC	2 cut(s)	726, 936
BbvI	GCAGC	1 cut(s)	726
BccI	CCATC	5 cut(s)	294, 847, 916, 991, 1109
BciT130I	CCWGG	4 cut(s)	18, 121, 407, 647
BciVI	GTATCC	2 cut(s)	305, 846
BcnI	CCSGG	2 cut(s)	639, 960
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	113, 572
BfmI	CTRYAG	4 cut(s)	201, 233, 618, 697
BfuI	GTATCC	2 cut(s)	305, 846
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	6 cut(s)	18, 121, 407, 639, 647, 960
Bme18I	GGWCC	1 cut(s)	1039
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	3 cut(s)	602, 871, 1039
BmiI	GGNNCC	7 cut(s)	229, 367, 644, 651, 991, 1040, 1041
BmrFI	CCNGG	6 cut(s)	18, 121, 407, 639, 647, 960
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	1044
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	639, 960
Bsa29I	ATCGAT	1 cut(s)	911
BsaAI	YACGTR	3 cut(s)	374, 428, 613
BsaJI	CCNNGG	5 cut(s)	396, 471, 638, 703, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse118I	RCCGGY	1 cut(s)	903
Bse1I	ACTGG	5 cut(s)	383, 604, 736, 1039, 1083
BseBI	CCWGG	4 cut(s)	18, 121, 407, 647
BseCI	ATCGAT	1 cut(s)	911
BseDI	CCNNGG	5 cut(s)	396, 471, 638, 703, 1109
BseGI	GGATG	2 cut(s)	13, 925
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	889
BseNI	ACTGG	5 cut(s)	383, 604, 736, 1039, 1083
BseRI	GAGGAG	1 cut(s)	1045
BseXI	GCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	771
Bsh1285I	CGRYCG	1 cut(s)	904
BshFI	GGCC	3 cut(s)	603, 872, 907
BshNI	GGYRCC	2 cut(s)	365, 642
BshVI	ATCGAT	1 cut(s)	911
BsiEI	CGRYCG	1 cut(s)	904
BsiHKAI	GWGCWC	2 cut(s)	726, 936
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	3 cut(s)	638, 904, 959
BslFI	GGGAC	2 cut(s)	610, 1052
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	610, 1052
BsnI	GGCC	3 cut(s)	603, 872, 907
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	2 cut(s)	726, 936
Bsp143I	GATC	3 cut(s)	227, 649, 1075
Bsp68I	TCGCGA	1 cut(s)	771
BspANI	GGCC	3 cut(s)	603, 872, 907
BspCNI	CTCAG	1 cut(s)	888
BspDI	ATCGAT	1 cut(s)	911
BspFNI	CGCG	1 cut(s)	771
BspLI	GGNNCC	7 cut(s)	229, 367, 644, 651, 991, 1040, 1041
BspPI	GGATC	4 cut(s)	222, 235, 644, 657
BspT107I	GGYRCC	2 cut(s)	365, 642
BsrFI	RCCGGY	1 cut(s)	903
BsrI	ACTGG	5 cut(s)	383, 604, 736, 1039, 1083
BssAI	RCCGGY	1 cut(s)	903
BssECI	CCNNGG	5 cut(s)	396, 471, 638, 703, 1109
BssMI	GATC	3 cut(s)	227, 649, 1075
BssT1I	CCWWGG	2 cut(s)	396, 703
Bst2UI	CCWGG	4 cut(s)	18, 121, 407, 647
Bst4CI	ACNGT	2 cut(s)	317, 622
BstBAI	YACGTR	3 cut(s)	374, 428, 613
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	295, 543, 875
BstF5I	GGATG	2 cut(s)	13, 925
BstFNI	CGCG	1 cut(s)	771
BstKTI	GATC	3 cut(s)	230, 652, 1078
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	227, 649, 1075
BstMCI	CGRYCG	1 cut(s)	904
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	4 cut(s)	18, 121, 407, 647
BstSCI	CCNGG	6 cut(s)	16, 119, 405, 637, 645, 958
BstSFI	CTRYAG	4 cut(s)	201, 233, 618, 697
BstSNI	TACGTA	2 cut(s)	428, 613
BstUI	CGCG	1 cut(s)	771
BstV1I	GCAGC	1 cut(s)	726
BstX2I	RGATCY	2 cut(s)	227, 649
BstYI	RGATCY	2 cut(s)	227, 649
Bsu15I	ATCGAT	1 cut(s)	911
BsuI	GTATCC	2 cut(s)	305, 846
BsuRI	GGCC	3 cut(s)	603, 872, 907
BsuTUI	ATCGAT	1 cut(s)	911
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	13, 925
BtsIMutI	CAGTG	2 cut(s)	999, 1090
BtuMI	TCGCGA	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	3 cut(s)	602, 871, 1039
ClaI	ATCGAT	1 cut(s)	911
Csp6I	GTAC	2 cut(s)	366, 643
CviAII	CATG	4 cut(s)	355, 752, 887, 955
CviQI	GTAC	2 cut(s)	366, 643
DdeI	CTNAG	3 cut(s)	295, 543, 875
DpnI	GATC	3 cut(s)	229, 651, 1077
DpnII	GATC	3 cut(s)	227, 649, 1075
EaeI	YGGCCR	1 cut(s)	905
Ecl136II	GAGCTC	2 cut(s)	724, 934
Eco105I	TACGTA	2 cut(s)	428, 613
Eco130I	CCWWGG	2 cut(s)	396, 703
Eco24I	GRGCYC	2 cut(s)	726, 936
Eco47I	GGWCC	1 cut(s)	1039
Eco53kI	GAGCTC	2 cut(s)	724, 934
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	935
EcoICRI	GAGCTC	2 cut(s)	724, 934
EcoO109I	RGGNCCY	1 cut(s)	1039
EcoRI	GAATTC	2 cut(s)	248, 453
EcoRII	CCWGG	4 cut(s)	16, 119, 405, 645
EcoT14I	CCWWGG	2 cut(s)	396, 703
EcoT38I	GRGCYC	2 cut(s)	726, 936
ErhI	CCWWGG	2 cut(s)	396, 703
FaeI	CATG	4 cut(s)	358, 755, 890, 958
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	2 cut(s)	610, 1052
FatI	CATG	4 cut(s)	354, 751, 886, 954
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	932
FriOI	GRGCYC	2 cut(s)	726, 936
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	2 cut(s)	113, 572
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	603, 872, 907
HapII	CCGG	3 cut(s)	638, 904, 959
Hin1II	CATG	4 cut(s)	358, 755, 890, 958
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	2 cut(s)	527, 561
HpaI	GTTAAC	1 cut(s)	678
HpaII	CCGG	3 cut(s)	638, 904, 959
HphI	GGTGA	4 cut(s)	251, 787, 937, 972
Hpy166II	GTNNAC	2 cut(s)	93, 678
Hpy188I	TCNGA	6 cut(s)	7, 190, 388, 844, 855, 878
Hpy8I	GTNNAC	2 cut(s)	93, 678
HpyAV	CCTTC	4 cut(s)	236, 320, 587, 1061
HpyCH4III	ACNGT	2 cut(s)	317, 622
HpyCH4IV	ACGT	4 cut(s)	373, 427, 612, 1062
HpyCH4V	TGCA	4 cut(s)	137, 218, 434, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	295, 543, 875
HpySE526I	ACGT	4 cut(s)	373, 427, 612, 1062
Hsp92II	CATG	4 cut(s)	358, 755, 890, 958
KflI	GGGWCCC	1 cut(s)	1039
KpnI	GGTACC	2 cut(s)	369, 646
KspAI	GTTAAC	1 cut(s)	678
Kzo9I	GATC	3 cut(s)	227, 649, 1075
LmnI	GCTCC	4 cut(s)	331, 721, 931, 962
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	2 cut(s)	113, 572
MaeII	ACGT	4 cut(s)	373, 427, 612, 1062
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	229, 651, 1077
MboI	GATC	3 cut(s)	227, 649, 1075
MboII	GAAGA	3 cut(s)	70, 332, 335
MflI	RGATCY	2 cut(s)	227, 649
MhlI	GDGCHC	2 cut(s)	726, 936
MluCI	AATT	5 cut(s)	72, 248, 266, 453, 708
MlyI	GAGTC	2 cut(s)	521, 555
MmeI	TCCRAC	3 cut(s)	555, 897, 1083
MroXI	GAANNNNTTC	2 cut(s)	829, 849
MseI	TTAA	3 cut(s)	504, 677, 1013
MslI	CAYNNNNRTG	1 cut(s)	844
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	638, 904, 959
MspR9I	CCNGG	6 cut(s)	18, 121, 407, 639, 647, 960
MvaI	CCWGG	4 cut(s)	18, 121, 407, 647
MvnI	CGCG	1 cut(s)	771
MwoI	GCNNNNNNNGC	1 cut(s)	548
NciI	CCSGG	2 cut(s)	639, 960
NdeII	GATC	3 cut(s)	227, 649, 1075
NlaIII	CATG	4 cut(s)	358, 755, 890, 958
NlaIV	GGNNCC	7 cut(s)	229, 367, 644, 651, 991, 1040, 1041
NmuCI	GTSAC	1 cut(s)	374
NruI	TCGCGA	1 cut(s)	771
PaeR7I	CTCGAG	1 cut(s)	935
PdmI	GAANNNNTTC	2 cut(s)	829, 849
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	2 cut(s)	521, 555
PpsI	GAGTC	2 cut(s)	521, 555
Ppu21I	YACGTR	3 cut(s)	374, 428, 613
PpuMI	RGGWCCY	1 cut(s)	1039
PsiI	TTATAA	1 cut(s)	174
Psp124BI	GAGCTC	2 cut(s)	726, 936
Psp5II	RGGWCCY	1 cut(s)	1039
Psp6I	CCWGG	4 cut(s)	16, 119, 405, 645
PspGI	CCWGG	4 cut(s)	16, 119, 405, 645
PspN4I	GGNNCC	7 cut(s)	229, 367, 644, 651, 991, 1040, 1041
PspPI	GGNCC	3 cut(s)	602, 871, 1039
PspPPI	RGGWCCY	1 cut(s)	1039
PsuI	RGATCY	2 cut(s)	227, 649
PvuII	CAGCTG	1 cut(s)	200
RruI	TCGCGA	1 cut(s)	771
RsaI	GTAC	2 cut(s)	367, 644
RsaNI	GTAC	2 cut(s)	366, 643
RseI	CAYNNNNRTG	1 cut(s)	844
SacI	GAGCTC	2 cut(s)	726, 936
SaqAI	TTAA	3 cut(s)	504, 677, 1013
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	3 cut(s)	227, 649, 1075
Sau96I	GGNCC	3 cut(s)	602, 871, 1039
SchI	GAGTC	2 cut(s)	521, 555
ScrFI	CCNGG	6 cut(s)	18, 121, 407, 639, 647, 960
SduI	GDGCHC	2 cut(s)	726, 936
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	4 cut(s)	201, 233, 618, 697
Sfr274I	CTCGAG	1 cut(s)	935
SinI	GGWCC	1 cut(s)	1039
SlaI	CTCGAG	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
SnaBI	TACGTA	2 cut(s)	428, 613
Sse9I	AATT	5 cut(s)	72, 248, 266, 453, 708
SspMI	CTAG	2 cut(s)	113, 572
SstI	GAGCTC	2 cut(s)	726, 936
StyD4I	CCNGG	6 cut(s)	16, 119, 405, 637, 645, 958
StyI	CCWWGG	2 cut(s)	396, 703
TaaI	ACNGT	2 cut(s)	317, 622
TaiI	ACGT	4 cut(s)	376, 430, 615, 1065
TaqI	TCGA	4 cut(s)	289, 911, 936, 1025
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	5 cut(s)	72, 248, 266, 453, 708
Tru1I	TTAA	3 cut(s)	504, 677, 1013
Tru9I	TTAA	3 cut(s)	504, 677, 1013
TscAI	CASTG	2 cut(s)	1006, 1090
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	4 cut(s)	45, 343, 606, 1008
TspRI	CASTG	2 cut(s)	1006, 1090
VpaK11BI	GGWCC	1 cut(s)	1039
XapI	RAATTY	2 cut(s)	248, 453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	935
XmnI	GAANNNNTTC	2 cut(s)	829, 849
XspI	CTAG	2 cut(s)	113, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.