Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002297

Physical Location & Seq

Genomic Coordinates Forward (+)

3042815 .. 3044116

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0039100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGTTGAGGAAATGTTCCCCTCTTGGATCAAAAAGAGAAAGAGAGATCCACGGTCAACAGTGGTCGAGAATAAGAGCACAAAAAGGAGAAAGAGAACAAATACATCATGGTCATCATCAAAGTGGTCCGAGCTTCAACCAGAATTGCTGGAGATGATTATAAAAAGACTCTCTTTCGTCGGCATGCTTCGTTTCAAAGCTGTCTGTTCTTCTTGGAACTCCATTGCACGATCCTACGCTGCTTCGATTATAAACCAAACTCCATGGCTCACTCTCCCTAGTGATGATGACCACACTCGCCGCTTCTATAGCCTTGAAGAGAAAAAGGTTTACACTGTTAAGAACTCGTTTCAAGACTTTCCTGGTGCTAGCTGGTGTGTGGGTTCATCTCATGGGTGGTTGGTGATTTTGGACGATCCAAACAATATCCCACATCTGTTTAATCCGATTTCTGAAAATAGATCAATGGAGCTCCCACATATCCCAAGTACTACAAATTCCTTGCTTGGTTCCCCTCCCTTCTACCATGTTGCTAAAGCTGTCCTCTCCTCCGACCCGTCTTGCAACAACAACTTCTCCGCTGCAATAATCTACGGTATCCAACCATCAAGACTTGCATTCTACAATCATGGAGACGAGGAATGGACCGACTTAAATGGTGAGCATCAAGAATATTGTGACATTATATTCCACAATGACAAATTATTTGCATTGGCCGACAATGGATGTGTTGAAGCTTGGGACTTTAGGAAACCCTCTCCCAAAAAGATAATAAATCTTCAACCTGCTTCTGCCAAAGAGTTGGATCTGGATTACACTTCCAATCGCGACAAGTTTTCCACAAATACTTACTTGGTGGAGTCATCGGATGAGATAATGTCTGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAGCTATCCATGAGATAGACGTTCCTGACGAGCCCTACAGTCCTTGTCCCTATAGGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCGAACAAGTGGGAGAAGGTGGAGTGTTTGCCTAACTGTGCTTTGTTTTTGGGCGGTAGCCAGTCAATATCATTGTCCACTAAAGATGTTTCAGGGTGCGAAGAAAACTCAATTTACTTCACAGATGATCGTTGGGATGAGATAGAACTGCTTGGTGATACTGACTCCTATGGCGGCCATGACATGGGAGTGTACAACTTAGAAGACAAAGTCGTGAAGCAATTTTATCCATTTGATAAATGGAGAATTGATCCACCACCTTTTTGGATTGTTCCTAGTCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

433

Amino Acids

49.76

Weight (kDa)

5.33

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	42 - 78	3.2e-06	F-box domain
Beta-prop_KIB1-4	PF03478	102 - 404	2.6e-55	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950 AT5G01950
fragaria_vesca	FvH4_6g09451 FvH4_6g09451 FvH4_6g09470 FvH4_6g09470
malus_domestica	MD04G1177400.v1.1 MD12G1192800.v1.1
prunus_persica	Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297000_v2.0.a1 Prupe.6G297100_v2.0.a1 Prupe.6G297200_v2.0.a1 Prupe.6G297400_v2.0.a1
pyrus_communis	pycom12g17950
rosa_chinensis	RchiOBHm_Chr3g0459941 RchiOBHm_Chr3g0459991 RchiOBHm_Chr3g0460021 RchiOBHm_Chr3g0460051
rosa_laevigata	RLG00000025048 RLG00000025050
rosa_multiflora	Rmu_sc0000240.1_g000049 Rmu_sc0000240.1_g000076 Rmu_sc0013658.1_g000003 Rmu_sc0030602.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419890 Rroxscaffold_6G00419900
rosa_rugosa	Rorug03G0038900 Rorug03G0039100
rosa_samantha	Rh3BG100400 Rh3BG100600 Rh3CG102200 Rh3CG102400 Rh3CG102700 Rh3DG101900
rosa_wichuraiana	Rw3G008220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	161, 251
Acc36I	ACCTGC	1 cut(s)	793
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AccII	CGCG	1 cut(s)	828
AciI	CCGC	6 cut(s)	301, 579, 889, 1013, 1068, 1188
AclWI	GGATC	6 cut(s)	35, 41, 225, 410, 813, 1259
AcoI	YGGCCR	2 cut(s)	714, 1189
AcsI	RAATTY	2 cut(s)	496, 1006
AfaI	GTAC	2 cut(s)	490, 1208
AfiI	CCNNNNNNNGG	1 cut(s)	1198
AgsI	TTSAA	7 cut(s)	137, 196, 317, 353, 734, 782, 1000
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	8 cut(s)	133, 200, 372, 472, 539, 737, 926, 1003
AluI	AGCT	8 cut(s)	133, 200, 372, 472, 539, 737, 926, 1003
Alw21I	GWGCWC	2 cut(s)	80, 474
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	6 cut(s)	35, 41, 225, 410, 813, 1259
AoxI	GGCC	2 cut(s)	714, 1189
ApeKI	GCWGC	2 cut(s)	239, 581
ApoI	RAATTY	2 cut(s)	496, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AspS9I	GGNCC	2 cut(s)	126, 645
AsuHPI	GGTGA	3 cut(s)	415, 671, 1181
AsuNHI	GCTAGC	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	126, 645
BanII	GRGCYC	2 cut(s)	474, 957
BbsI	GAAGAC	2 cut(s)	988, 1224
Bbv12I	GWGCWC	2 cut(s)	80, 474
BbvI	GCAGC	2 cut(s)	226, 568
BccI	CCATC	1 cut(s)	613
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	3 cut(s)	279, 369, 1290
BfmI	CTRYAG	3 cut(s)	307, 958, 973
BfuAI	ACCTGC	1 cut(s)	793
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	240, 301, 582, 1014, 1189
BlsI	GCNGC	5 cut(s)	241, 302, 583, 1015, 1190
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	126, 645
BmgT120I	GGNCC	2 cut(s)	126, 645
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	673
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	988, 1224
BpmI	CTGGAG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	50, 263, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	1198
Bse1I	ACTGG	1 cut(s)	1075
Bse3DI	GCAATG	2 cut(s)	222, 980
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	50, 263, 1295
BseGI	GGATG	3 cut(s)	731, 874, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	1198
BseMI	GCAATG	2 cut(s)	222, 980
BseNI	ACTGG	1 cut(s)	1075
BseRI	GAGGAG	2 cut(s)	538, 929
BseXI	GCAGC	2 cut(s)	226, 568
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	716, 1191
BsiHKAI	GWGCWC	2 cut(s)	80, 474
BslFI	GGGAC	2 cut(s)	755, 954
BslI	CCNNNNNNNGG	1 cut(s)	1198
BsmAI	GTCTC	1 cut(s)	627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	2 cut(s)	755, 954
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	716, 1191
Bsp1286I	GDGCHC	3 cut(s)	80, 474, 957
Bsp1407I	TGTACA	1 cut(s)	1206
Bsp143I	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
Bsp19I	CCATGG	2 cut(s)	263, 1295
Bsp68I	TCGCGA	1 cut(s)	828
BspACI	CCGC	6 cut(s)	301, 579, 889, 1013, 1068, 1188
BspANI	GGCC	2 cut(s)	716, 1191
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	6 cut(s)	35, 41, 225, 410, 813, 1259
BsrDI	GCAATG	2 cut(s)	222, 980
BsrGI	TGTACA	1 cut(s)	1206
BsrI	ACTGG	1 cut(s)	1075
BssECI	CCNNGG	3 cut(s)	50, 263, 1295
BssMI	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
BssT1I	CCWWGG	2 cut(s)	263, 1295
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	6 cut(s)	54, 61, 337, 596, 962, 1052
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	1206
BstC8I	GCNNGC	2 cut(s)	185, 370
BstDEI	CTNAG	1 cut(s)	1213
BstDSI	CCRYGG	3 cut(s)	50, 263, 1295
BstF5I	GGATG	3 cut(s)	731, 874, 1156
BstFNI	CGCG	1 cut(s)	828
BstKTI	GATC	8 cut(s)	30, 49, 233, 418, 464, 808, 1144, 1267
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	3 cut(s)	307, 958, 973
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	226, 568
BstV2I	GAAGAC	2 cut(s)	988, 1224
BstX2I	RGATCY	2 cut(s)	46, 805
BstXI	CCANNNNNNTGG	2 cut(s)	802, 1278
BstYI	RGATCY	2 cut(s)	46, 805
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	2 cut(s)	716, 1191
BtgI	CCRYGG	3 cut(s)	50, 263, 1295
BtsCI	GGATG	3 cut(s)	731, 874, 1156
BtsIMutI	CAGTG	2 cut(s)	66, 333
BtuMI	TCGCGA	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	185, 370
Cfr13I	GGNCC	2 cut(s)	126, 645
Csp6I	GTAC	2 cut(s)	489, 1207
CviQI	GTAC	2 cut(s)	489, 1207
DdeI	CTNAG	1 cut(s)	1213
DpnI	GATC	8 cut(s)	29, 48, 232, 417, 463, 807, 1143, 1266
DpnII	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
EaeI	YGGCCR	2 cut(s)	714, 1189
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	263, 1295
Eco24I	GRGCYC	2 cut(s)	474, 957
Eco47I	GGWCC	2 cut(s)	126, 645
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	263, 1295
EcoT38I	GRGCYC	2 cut(s)	474, 957
ErhI	CCWWGG	2 cut(s)	263, 1295
Esp3I	CGTCTC	1 cut(s)	627
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	2 cut(s)	755, 954
Fnu4HI	GCNGC	5 cut(s)	240, 301, 582, 1014, 1189
FokI	GGATG	3 cut(s)	738, 881, 1163
FriOI	GRGCYC	2 cut(s)	474, 957
Fsp4HI	GCNGC	5 cut(s)	240, 301, 582, 1014, 1189
FspBI	CTAG	3 cut(s)	279, 369, 1290
GluI	GCNGC	5 cut(s)	240, 301, 582, 1014, 1189
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	716, 1191
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	3 cut(s)	168, 860, 1178
HphI	GGTGA	3 cut(s)	415, 671, 1181
Hpy166II	GTNNAC	4 cut(s)	57, 331, 1092, 1207
Hpy188I	TCNGA	5 cut(s)	130, 447, 454, 553, 868
Hpy188III	TCNNGA	8 cut(s)	67, 353, 609, 668, 809, 827, 947, 1228
Hpy8I	GTNNAC	4 cut(s)	57, 331, 1092, 1207
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	529, 1024
HpyCH4III	ACNGT	6 cut(s)	54, 61, 337, 596, 962, 1052
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	6 cut(s)	227, 564, 584, 617, 710, 985
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	1213
HpySE526I	ACGT	1 cut(s)	942
Kzo9I	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
LmnI	GCTCC	2 cut(s)	469, 477
Lsp1109I	GCAGC	2 cut(s)	226, 568
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	279, 369, 1290
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	8 cut(s)	29, 48, 232, 417, 463, 807, 1143, 1266
MboI	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
MboII	GAAGA	6 cut(s)	201, 329, 770, 988, 1127, 1229
MflI	RGATCY	2 cut(s)	46, 805
MhlI	GDGCHC	3 cut(s)	80, 474, 957
MluCI	AATT	8 cut(s)	143, 496, 701, 986, 1006, 1125, 1235, 1260
MlyI	GAGTC	3 cut(s)	162, 869, 1172
MmeI	TCCRAC	3 cut(s)	576, 625, 783
MnlI	CCTC	8 cut(s)	31, 525, 554, 559, 631, 766, 907, 910
MseI	TTAA	3 cut(s)	339, 441, 653
MslI	CAYNNNNRTG	2 cut(s)	121, 1202
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	2 cut(s)	263, 1295
NdeII	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
NheI	GCTAGC	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	677
NruI	TCGCGA	1 cut(s)	828
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PctI	GAATGC	1 cut(s)	617
PflFI	GACNNNGTC	1 cut(s)	1223
PflMI	CCANNNNNTGG	1 cut(s)	1198
PkrI	GCNGC	5 cut(s)	241, 302, 583, 1015, 1190
PleI	GAGTC	3 cut(s)	162, 868, 1172
PpsI	GAGTC	3 cut(s)	162, 868, 1172
PsiI	TTATAA	2 cut(s)	161, 251
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	126, 645
PsuI	RGATCY	2 cut(s)	46, 805
PsyI	GACNNNGTC	1 cut(s)	1223
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	2 cut(s)	490, 1208
RsaNI	GTAC	2 cut(s)	489, 1207
RseI	CAYNNNNRTG	2 cut(s)	121, 1202
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	339, 441, 653
SatI	GCNGC	5 cut(s)	240, 301, 582, 1014, 1189
Sau3AI	GATC	8 cut(s)	27, 46, 230, 415, 461, 805, 1141, 1264
Sau96I	GGNCC	2 cut(s)	126, 645
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	3 cut(s)	162, 869, 1172
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	80, 474, 957
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	3 cut(s)	307, 958, 973
SinI	GGWCC	2 cut(s)	126, 645
SmiMI	CAYNNNNRTG	2 cut(s)	121, 1202
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	8 cut(s)	143, 496, 701, 986, 1006, 1125, 1235, 1260
SsiI	CCGC	6 cut(s)	301, 579, 889, 1013, 1068, 1188
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	3 cut(s)	279, 369, 1290
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	263, 1295
TaaI	ACNGT	6 cut(s)	54, 61, 337, 596, 962, 1052
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	2 cut(s)	66, 245
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	8 cut(s)	143, 496, 701, 986, 1006, 1125, 1235, 1260
TatI	WGTACW	2 cut(s)	488, 1206
TauI	GCSGC	3 cut(s)	303, 1016, 1191
Tru1I	TTAA	3 cut(s)	339, 441, 653
Tru9I	TTAA	3 cut(s)	339, 441, 653
TscAI	CASTG	2 cut(s)	66, 340
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	2 cut(s)	239, 581
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	66, 340
Tth111I	GACNNNGTC	1 cut(s)	1223
Van91I	CCANNNNNTGG	1 cut(s)	1198
VpaK11BI	GGWCC	2 cut(s)	126, 645
XapI	RAATTY	2 cut(s)	496, 1006
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1251, 1275
XspI	CTAG	3 cut(s)	279, 369, 1290
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.