Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

38776570 .. 38778933

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGTACATGTAGAAGAAAAGGAAGACAGCAAAACTGATCACCTGCAGGAAAGCTCACTTCATGTGTCTTATGGGGTGGTGAATGACTTGCCAGAAGATGCAAGCTACACAAAGAAACGGAAAGGGATGAGATCTGTACTCATTAAACAAGAGGAACGGGAAACAGTGTTGTACAAACATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACTTGTTATACTGTAACAGAAGTTCTTCCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGATCAAATCACGTCAAAGAGTTATGCACCTGGATTCTACATTCTTATATATGCAAATATTCTTTCAATTGGTCAGGCATTGTGAGCACATTATCTCTCTGGGCCATAATGCCACTTCTAATTTTGTTCCATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCTTGGATTCCATTACCAGATCTCCTGTTTATGCACAATTTGGAGAAGCATTAAATGGTTTATCATCAATTCGTGCCTATCAAGCTTATGATCGGACGGGTACGAGTTTCCGATCACGTACCCTTCTGGAAGGTCTATGGATATATAATAATATCAGATTCACTCTTGTGAAATTTAGTTCAAGCCACTGGCTTGATATAAGGTTGGAAACACTAGGAGGTATCATGATTTGGGTGATAGCAACCTTTGGTGTCATGCAGAATGGAAAAGCAGAAAACCAAGTACAATTTGCATCGACAGTGGGAACTGTGCGTTTCAATCTTGATCCTTTCAGCGAGCATAATGACGCTGACCTTTGGGAAGCCCTAGAAAGGGCACATCTAAAGGATGTCATTAGGAGGAATTCCTTAATTTTAAAATTAATTATAGTCTTATTATGCTTAGGGAACTGCAACTCCCGGTACTTAATTCTTTACTCGAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

314

Amino Acids

36.26

Weight (kDa)

8.68

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	629, 859
AfaI	GTAC	7 cut(s)	9, 141, 176, 559, 577, 741, 920
AfiI	CCNNNNNNNGG	3 cut(s)	202, 828, 829
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	256, 349, 639, 775
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	311
AleI	CACNNNNGTG	1 cut(s)	623
AloI	GAACNNNNNNTCC	2 cut(s)	896, 928
AluBI	AGCT	3 cut(s)	57, 108, 542
AluI	AGCT	3 cut(s)	57, 108, 542
Alw21I	GWGCWC	2 cut(s)	371, 440
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	2 cut(s)	193, 384
ApeKI	GCWGC	2 cut(s)	259, 416
ApoI	RAATTY	2 cut(s)	629, 859
AseI	ATTAAT	1 cut(s)	878
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	916
AsuHPI	GGTGA	3 cut(s)	35, 94, 703
BaeGI	GKGCMC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	371, 440
BbvI	GCAGC	2 cut(s)	271, 428
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	916
BfaI	CTAG	2 cut(s)	671, 824
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	54
BglII	AGATCT	2 cut(s)	134, 476
BisI	GCNGC	2 cut(s)	260, 417
BlsI	GCNGC	2 cut(s)	261, 418
Bme1390I	CCNGG	2 cut(s)	313, 916
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	313, 916
BmsI	GCATC	2 cut(s)	91, 758
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	898
BpuMI	CCSGG	1 cut(s)	916
BsaAI	YACGTR	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 896, 926
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 828, 829
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	135, 440, 850
BseLI	CCNNNNNNNGG	3 cut(s)	202, 828, 829
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	2 cut(s)	271, 428
BshFI	GGCC	2 cut(s)	195, 386
BsiHKAI	GWGCWC	2 cut(s)	371, 440
BsiSI	CCGG	1 cut(s)	916
BslI	CCNNNNNNNGG	3 cut(s)	202, 828, 829
BsnI	GGCC	2 cut(s)	195, 386
Bsp1286I	GDGCHC	3 cut(s)	371, 440, 835
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
BspANI	GGCC	2 cut(s)	195, 386
BspHI	TCATGA	1 cut(s)	681
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	776
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	650
BssMI	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	4 cut(s)	169, 232, 757, 766
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	106, 794
BstDEI	CTNAG	1 cut(s)	898
BstF5I	GGATG	3 cut(s)	135, 440, 850
BstKTI	GATC	7 cut(s)	43, 137, 287, 479, 550, 572, 784
BstMBI	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 539
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	2 cut(s)	14, 185
BstSCI	CCNGG	2 cut(s)	311, 914
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	835
BstV1I	GCAGC	2 cut(s)	271, 428
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	134, 476
BstYI	RGATCY	2 cut(s)	134, 476
BsuRI	GGCC	2 cut(s)	195, 386
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	135, 440, 850
BtsIMutI	CAGTG	3 cut(s)	174, 643, 762
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	106, 794
CciI	TCATGA	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	384
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	7 cut(s)	8, 140, 175, 558, 576, 740, 919
CviAII	CATG	8 cut(s)	11, 65, 182, 208, 265, 413, 682, 712
CviJI	RGCY	9 cut(s)	57, 108, 195, 386, 419, 542, 642, 649, 821
CviKI_1	RGCY	9 cut(s)	57, 108, 195, 386, 419, 542, 642, 649, 821
CviQI	GTAC	7 cut(s)	8, 140, 175, 558, 576, 740, 919
DdeI	CTNAG	1 cut(s)	898
DpnI	GATC	7 cut(s)	42, 136, 286, 478, 549, 571, 783
DpnII	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
DraI	TTTAAA	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	8 cut(s)	14, 68, 185, 211, 268, 416, 685, 715
FatI	CATG	8 cut(s)	10, 64, 181, 207, 264, 412, 681, 711
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	260, 417
FokI	GGATG	3 cut(s)	142, 427, 857
Fsp4HI	GCNGC	2 cut(s)	260, 417
FspBI	CTAG	2 cut(s)	671, 824
GluI	GCNGC	2 cut(s)	260, 417
HaeIII	GGCC	2 cut(s)	195, 386
HapII	CCGG	1 cut(s)	916
HgaI	GACGC	1 cut(s)	812
Hin1II	CATG	8 cut(s)	14, 68, 185, 211, 268, 416, 685, 715
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	3 cut(s)	316, 464, 615
HpaII	CCGG	1 cut(s)	916
HphI	GGTGA	3 cut(s)	35, 94, 703
Hpy188I	TCNGA	5 cut(s)	249, 435, 552, 569, 614
Hpy188III	TCNNGA	3 cut(s)	584, 682, 779
HpyAV	CCTTC	2 cut(s)	581, 590
HpyCH4III	ACNGT	4 cut(s)	169, 232, 757, 766
HpyCH4IV	ACGT	2 cut(s)	294, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 539
HpyF3I	CTNAG	1 cut(s)	898
HpySE526I	ACGT	2 cut(s)	294, 574
Hsp92II	CATG	8 cut(s)	14, 68, 185, 211, 268, 416, 685, 715
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
Lsp1109I	GCAGC	2 cut(s)	271, 428
LweI	GCATC	2 cut(s)	91, 758
MaeI	CTAG	2 cut(s)	671, 824
MaeII	ACGT	2 cut(s)	294, 574
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	7 cut(s)	42, 136, 286, 478, 549, 571, 783
MboI	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
MboII	GAAGA	4 cut(s)	29, 38, 110, 236
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	2 cut(s)	134, 476
MhlI	GDGCHC	3 cut(s)	371, 440, 835
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	4 cut(s)	148, 185, 668, 849
Mph1103I	ATGCAT	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	7 cut(s)	147, 270, 509, 866, 872, 878, 923
MslI	CAYNNNNRTG	1 cut(s)	623
MspI	CCGG	1 cut(s)	916
MspR9I	CCNGG	2 cut(s)	313, 916
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	366, 539
NciI	CCSGG	1 cut(s)	916
NdeII	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
NlaIII	CATG	8 cut(s)	14, 68, 185, 211, 268, 416, 685, 715
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	2 cut(s)	14, 185
OliI	CACNNNNGTG	1 cut(s)	623
PagI	TCATGA	1 cut(s)	681
PaqCI	CACCTGC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	195
PciI	ACATGT	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	316, 464, 615
PkrI	GCNGC	2 cut(s)	261, 418
Ppu21I	YACGTR	1 cut(s)	575
PscI	ACATGT	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	878
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	384
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	134, 476
RsaI	GTAC	7 cut(s)	9, 141, 176, 559, 577, 741, 920
RsaNI	GTAC	7 cut(s)	8, 140, 175, 558, 576, 740, 919
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	7 cut(s)	147, 270, 509, 866, 872, 878, 923
SatI	GCNGC	2 cut(s)	260, 417
Sau3AI	GATC	7 cut(s)	40, 134, 284, 476, 547, 569, 781
Sau96I	GGNCC	1 cut(s)	384
SbfI	CCTGCAGG	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	313, 916
SdaI	CCTGCAGG	1 cut(s)	51
SduI	GDGCHC	3 cut(s)	371, 440, 835
SfaNI	GCATC	2 cut(s)	91, 758
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse8387I	CCTGCAGG	1 cut(s)	51
SseBI	AGGCCT	1 cut(s)	195
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	671, 824
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	311, 914
TaaI	ACNGT	4 cut(s)	169, 232, 757, 766
TaiI	ACGT	2 cut(s)	297, 577
TaqI	TCGA	2 cut(s)	752, 935
TatI	WGTACW	4 cut(s)	7, 139, 174, 739
TfiI	GAWTC	3 cut(s)	316, 464, 615
Tru1I	TTAA	7 cut(s)	147, 270, 509, 866, 872, 878, 923
Tru9I	TTAA	7 cut(s)	147, 270, 509, 866, 872, 878, 923
TscAI	CASTG	3 cut(s)	174, 650, 762
TseI	GCWGC	2 cut(s)	259, 416
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	3 cut(s)	174, 650, 762
VspI	ATTAAT	1 cut(s)	878
XapI	RAATTY	2 cut(s)	629, 859
XceI	RCATGY	2 cut(s)	14, 185
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	671, 824
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.