Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

11329800 .. 11331078

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTCATTCTATCTTGTGTAGGAACTGTGCGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTTTGGGAAGCCCTAGAAAGGGCGCATCTAAAGGATGTCATGAGGAGGAATTCATTCTGTCTCGATGCTGAGGTCCTAGAACATGGTTCCCCAGAAGAACTGCTGTTAAATGAAGATAGCCCATTCTCCAAAATGGTCAGTAGTACAGGACCTTGTAATGCTCAATACTTACGCAGCCTGGTATTCGAAGGCAAGCAGAATAAGGTGAATAGAGACCAGCAACTGGTTGGCCAGAGCCGCAGGAGATGGTTAGCCTCTTCGTGCTGGGCTGCTGCTGCCCAATTTGCTTTGACCGTTAGTCTCACACCCTCACGGAGCGATCTCCAAAGGTTAGATATTGTAGACGAGGACAATATCCTCATGAAAACAAAGGATGCAGTTATAACACTACAGGGAGTTTTGGAAGGAAAGCATGATAAAAATATGGACAAATCACTAAATCAGCACCATATTCCAAGAGAGGGGTGGTGGTCAGCTTTCTTCAGAATAGTTGAAGGTCTGGCCGTGATGGGCAGGCTGTCTCAGAACAGACTTCATCCGCTAGAAGCTGAAGATTTTGAAGACAAATCTACAGGTTGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

218

Amino Acids

24.78

Weight (kDa)

5.51

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	3 cut(s)	31, 310, 611
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	2 cut(s)	301, 573
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	538, 642
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	4 cut(s)	90, 91, 295, 533
AgsI	TTSAA	2 cut(s)	566, 632
AhdI	GACNNNNNGTC	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	548, 620
AluI	AGCT	2 cut(s)	548, 620
Alw26I	GTCTC	4 cut(s)	137, 279, 377, 597
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	301, 573
ApeKI	GCWGC	4 cut(s)	246, 341, 344, 347
ApoI	RAATTY	1 cut(s)	121
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	145, 221
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	145, 221
BalI	TGGCCA	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	258, 328, 331, 334
BccI	CCATC	2 cut(s)	312, 574
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	251
BcoDI	GTCTC	4 cut(s)	137, 279, 377, 597
BfaI	CTAG	3 cut(s)	86, 149, 614
BfmI	CTRYAG	2 cut(s)	461, 642
BisI	GCNGC	5 cut(s)	247, 310, 342, 345, 348
BlsI	GCNGC	5 cut(s)	248, 311, 343, 346, 349
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	145, 221
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	145, 221
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	55, 106, 127, 436
BpiI	GAAGAC	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 91, 295, 533
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	251
BseGI	GGATG	3 cut(s)	112, 451, 607
BseLI	CCNNNNNNNGG	4 cut(s)	90, 91, 295, 533
BseMII	CTCAG	2 cut(s)	132, 608
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	258, 328, 331, 334
BseYI	CCCAGC	1 cut(s)	336
BshFI	GGCC	2 cut(s)	303, 575
BslI	CCNNNNNNNGG	4 cut(s)	90, 91, 295, 533
BsmAI	GTCTC	4 cut(s)	137, 279, 377, 597
BsnI	GGCC	2 cut(s)	303, 575
Bso31I	GGTCTC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	43, 391
BspACI	CCGC	3 cut(s)	31, 310, 611
BspANI	GGCC	2 cut(s)	303, 575
BspCNI	CTCAG	2 cut(s)	133, 607
BspHI	TCATGA	2 cut(s)	111, 432
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	43, 391
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	28, 367
Bst6I	CTCTTC	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	266, 587
BstDEI	CTNAG	2 cut(s)	141, 594
BstF5I	GGATG	3 cut(s)	112, 451, 607
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	46, 394
BstMAI	GTCTC	4 cut(s)	137, 279, 377, 597
BstMBI	GATC	2 cut(s)	43, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 347, 356
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	461, 642
BstV1I	GCAGC	4 cut(s)	258, 328, 331, 334
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	303, 575
BtsCI	GGATG	3 cut(s)	112, 451, 607
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	266, 587
CaiI	CAGNNNCTG	1 cut(s)	295
CciI	TCATGA	2 cut(s)	111, 432
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	145, 221
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	4 cut(s)	112, 155, 433, 485
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	141, 594
DpnI	GATC	2 cut(s)	45, 393
DpnII	GATC	2 cut(s)	43, 391
DriI	GACNNNNNGTC	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	301, 573
Eam1104I	CTCTTC	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	145, 221
Eco57I	CTGAAG	2 cut(s)	538, 642
EcoO109I	RGGNCCY	2 cut(s)	145, 221
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	115, 158, 436, 488
FaiI	YATR	8 cut(s)	60, 113, 156, 434, 455, 486, 497, 522
FatI	CATG	4 cut(s)	111, 154, 432, 484
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	247, 310, 342, 345, 348
FokI	GGATG	3 cut(s)	119, 458, 594
Fsp4HI	GCNGC	5 cut(s)	247, 310, 342, 345, 348
FspBI	CTAG	3 cut(s)	86, 149, 614
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	5 cut(s)	247, 310, 342, 345, 348
GsaI	CCCAGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	303, 575
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	115, 158, 436, 488
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	557, 597
Hpy188III	TCNNGA	4 cut(s)	41, 112, 134, 433
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	254, 470, 560
HpyCH4III	ACNGT	2 cut(s)	28, 367
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 347, 356
HpyF3I	CTNAG	2 cut(s)	141, 594
Hsp92II	CATG	4 cut(s)	115, 158, 436, 488
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	43, 391
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	4 cut(s)	258, 328, 331, 334
LweI	GCATC	4 cut(s)	55, 106, 127, 436
MaeI	CTAG	3 cut(s)	86, 149, 614
MalI	GATC	2 cut(s)	45, 393
MboI	GATC	2 cut(s)	43, 391
MboII	GAAGA	6 cut(s)	179, 197, 321, 544, 635, 644
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	121, 353
MluNI	TGGCCA	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	8 cut(s)	108, 111, 136, 337, 391, 412, 440, 526
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	2 cut(s)	36, 179
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	309, 347, 356
NdeII	GATC	2 cut(s)	43, 391
NlaIII	CATG	4 cut(s)	115, 158, 436, 488
NlaIV	GGNNCC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	258
PagI	TCATGA	2 cut(s)	111, 432
PdmI	GAANNNNTTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	248, 311, 343, 346, 349
PpuMI	RGGWCCY	2 cut(s)	145, 221
PsiI	TTATAA	1 cut(s)	455
Psp5II	RGGWCCY	2 cut(s)	145, 221
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	145, 221
PspPPI	RGGWCCY	2 cut(s)	145, 221
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	36, 179
SatI	GCNGC	5 cut(s)	247, 310, 342, 345, 348
Sau3AI	GATC	2 cut(s)	43, 391
Sau96I	GGNCC	2 cut(s)	145, 221
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	9 cut(s)	75, 147, 226, 279, 404, 550, 571, 622, 649
SfaNI	GCATC	4 cut(s)	55, 106, 127, 436
SfcI	CTRYAG	2 cut(s)	461, 642
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	2 cut(s)	145, 221
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	121, 353
SsiI	CCGC	3 cut(s)	31, 310, 611
SspMI	CTAG	3 cut(s)	86, 149, 614
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	28, 367
TaqI	TCGA	2 cut(s)	135, 258
TasI	AATT	2 cut(s)	121, 353
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	36, 179
Tru9I	TTAA	2 cut(s)	36, 179
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	4 cut(s)	246, 341, 344, 347
TspDTI	ATGAA	4 cut(s)	114, 198, 449, 596
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	145, 221
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	296, 534
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	3 cut(s)	86, 149, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.