Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005017.1

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

44619 .. 46042

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005017.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcaatctggtgtgatattgatttggatgaggataggctcaactgcaggggatggctgtgtggattggctatggcgacgggctgcgtctggttcggctgggtcaaggtgtgctggtggagtggtcttccggtgtgcttcggagaaggtgacttcggtggatatcagtggcggcttcgacgacgttttggctagtggtgctggactccgtcacgacccacttcactctcggcagatagtcctcactcgcccccgaccacagggcgacttggaaggcattcaggagctcttggactccggaaccaacgtcaatttcactgacatagatggacgcatgactctccacgtcgcaacctatcagggcctgaccgacgttaacgaccacttcttctactacaaccactgctttctaagaacccaccgtcgaatatgcaggaagaaaaatggggaagagccacaacaacctccaccaccaccactactaatgcgcaacgatgttgtcctccgctacttcttgattgggtttggggataaagactgcttcttcctccactgccagcgagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.03

Weight (kDa)

7.03

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	2 cut(s)	171, 505
AfiI	CCNNNNNNNGG	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	47, 320
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	84, 172
BlsI	GCNGC	2 cut(s)	85, 173
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	118
BsaWI	WCCGGW	2 cut(s)	129, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	296
BseGI	GGATG	2 cut(s)	33, 58
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	130, 297
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	296
BspACI	CCGC	2 cut(s)	171, 505
BspANI	GGCC	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	33, 58
BstHHI	GCGC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	33, 58
BtsI	GCAGTG	2 cut(s)	400, 550
BtsIMutI	CAGTG	4 cut(s)	172, 315, 400, 550
Cac8I	GCNNGC	1 cut(s)	557
CaiI	CAGNNNCTG	1 cut(s)	364
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	2 cut(s)	75, 339
CviAII	CATG	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	73, 323, 335, 430
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	84, 172
FokI	GGATG	2 cut(s)	40, 65
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	84, 172
FspBI	CTAG	1 cut(s)	192
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	2 cut(s)	84, 172
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	130, 297
HgaI	GACGC	2 cut(s)	75, 339
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	204, 293, 337
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	2 cut(s)	130, 297
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	212, 281, 297, 514
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	6 cut(s)	81, 182, 185, 350, 374, 426
HpyAV	CCTTC	2 cut(s)	139, 266
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	4 cut(s)	183, 306, 345, 372
HpyCH4V	TGCA	3 cut(s)	4, 47, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	4 cut(s)	183, 306, 345, 372
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	4 cut(s)	183, 306, 345, 372
MaeIII	GTNAC	2 cut(s)	148, 209
MboII	GAAGA	5 cut(s)	118, 379, 448, 461, 535
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	3 cut(s)	198, 287, 331
MnlI	CCTC	5 cut(s)	24, 251, 474, 512, 557
MroI	TCCGGA	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	375
MspI	CCGG	2 cut(s)	130, 297
Mva1269I	GAATGC	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	148, 209
NsbI	TGCGCA	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	85, 173
PleI	GAGTC	3 cut(s)	198, 287, 331
PpsI	GAGTC	3 cut(s)	198, 287, 331
Psp124BI	GAGCTC	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	84, 172
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	3 cut(s)	198, 287, 331
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	110, 150, 186, 288, 309, 348, 356, 375, 466
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	171, 505
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	4 cut(s)	186, 309, 348, 375
TaqI	TCGA	2 cut(s)	177, 424
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	310
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	4 cut(s)	172, 322, 407, 557
TseFI	GTSAC	2 cut(s)	148, 209
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	148, 209
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	4 cut(s)	172, 322, 407, 557
Tth111I	GACNNNGTC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.