Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

59388167 .. 59393026

Gene Structure 4860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGACATTAATGGAAAATCTATAGACAATAATATCAGATTCACACTGGTGAACATGAGTGGCAACTGTTGGCTTGGAATTCGTTTGGAAACATTAGGAGGCCTCATGATATGGTTAACAGCTACCTTTGCTGTTATGCAGAATGGAAGAGCAGAGAATCAGCAGGAGTTTGCATCCACTATGGGAACTGTTGGATTTAATCTTTATCCCTTTCAAGAGCATAATGATGCTGACATCTGGGAAGCTTTAGAGAGAGCACATTTAAAAGATACCATCAGGAGGAATTCTTTGGGGTTAGATGCTGAGGTTCATGAATATGATTCTCCAGAGCACCTGCTGTCAAATGAAGGAAGCGCTTTCTCTAAAATGGTCCAAAGTACAGGATCTGCAAATGCTCAATATTTACGAAGCTTGGTAGTGGAAGGTACTAAAAACAAGTTTGGGAGAGAAGATCAGAACAAACAACTCTATGGACAGAGGAGATGGGCGGCCTCTTCCTCTTCTCCCTGGGCTGCAGCTACCCAGCTTGCCTTAACTGTTAGCCTGACTTCTTCACAGAAGGATCTTCAACTGCTGGAAATTGAAGATGAGAACAATATCCTCAGGAAGACCAAGGATGCAGTGATAACTCTCCAAGGAGTTCTGGAAGGGAAGCATGATAAAGTTATTGAGGAATCTCTTGAGCAATACCAGATCTCAAGAGATGGGTGGTGGTCAGCTCTATACAGAATGGTTGAAGGTCTTGCTGTGATGAGTAGGTTGGCTAGGAGCAGGGTTCAGCAATCAGAATATGGTTTTGAAGAAGGATCAATTGATTGGGACCATGCTGACATTAGGAAACCTCTCTTTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

286

Amino Acids

32.29

Weight (kDa)

5.17

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	345
AciI	CCGC	2 cut(s)	5, 491
AclWI	GGATC	3 cut(s)	394, 573, 817
AcsI	RAATTY	2 cut(s)	81, 286
AfaI	GTAC	2 cut(s)	382, 430
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	218, 572, 587, 740, 803
AjnI	CCWGG	1 cut(s)	509
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	6 cut(s)	125, 248, 414, 521, 529, 722
AluI	AGCT	6 cut(s)	125, 248, 414, 521, 529, 722
Alw21I	GWGCWC	2 cut(s)	262, 336
AlwI	GGATC	3 cut(s)	394, 573, 817
AlwNI	CAGNNNCTG	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	2 cut(s)	103, 492
ApeKI	GCWGC	2 cut(s)	515, 518
ApoI	RAATTY	2 cut(s)	81, 286
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	373, 823
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	373, 823
AxyI	CCTNAGG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	262, 336
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	502, 530
BccI	CCATC	3 cut(s)	284, 480, 701
BciT130I	CCWGG	1 cut(s)	511
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	2 cut(s)	24, 516
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	3 cut(s)	492, 516, 519
BlsI	GCNGC	3 cut(s)	493, 517, 520
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	2 cut(s)	373, 823
BmgT120I	GGNCC	2 cut(s)	373, 823
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	4 cut(s)	185, 220, 292, 610
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	685, 704
BsaJI	CCNNGG	4 cut(s)	509, 510, 615, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	54
Bse21I	CCTNAGG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	4 cut(s)	509, 510, 615, 637
BseGI	GGATG	2 cut(s)	176, 625
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	297, 619
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	502, 530
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	2 cut(s)	105, 494
BsiHKAI	GWGCWC	2 cut(s)	262, 336
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	836
BsnI	GGCC	2 cut(s)	105, 494
Bsp1286I	GDGCHC	2 cut(s)	262, 336
Bsp143I	GATC	5 cut(s)	386, 454, 565, 696, 809
BspACI	CCGC	2 cut(s)	5, 491
BspANI	GGCC	2 cut(s)	105, 494
BspCNI	CTCAG	2 cut(s)	298, 618
BspHI	TCATGA	2 cut(s)	108, 313
BspLI	GGNNCC	1 cut(s)	824
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	394, 573, 817
BspQI	GCTCTTC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	509, 510, 615, 637
BssMI	GATC	5 cut(s)	386, 454, 565, 696, 809
BssT1I	CCWWGG	2 cut(s)	615, 637
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	3 cut(s)	71, 193, 541
Bst6I	CTCTTC	3 cut(s)	145, 502, 508
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	306, 605
BstF5I	GGATG	2 cut(s)	176, 625
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	5 cut(s)	389, 457, 568, 699, 812
BstMBI	GATC	5 cut(s)	386, 454, 565, 696, 809
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	2 cut(s)	24, 516
BstV1I	GCAGC	2 cut(s)	502, 530
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	3 cut(s)	386, 565, 696
BstYI	RGATCY	3 cut(s)	386, 565, 696
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	105, 494
BtsCI	GGATG	2 cut(s)	176, 625
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	47, 630
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	2 cut(s)	108, 313
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	373, 823
Csp6I	GTAC	2 cut(s)	381, 429
CviAII	CATG	5 cut(s)	58, 109, 314, 659, 827
CviQI	GTAC	2 cut(s)	381, 429
DdeI	CTNAG	2 cut(s)	306, 605
DpnI	GATC	5 cut(s)	388, 456, 567, 698, 811
DpnII	GATC	5 cut(s)	386, 454, 565, 696, 809
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	3 cut(s)	145, 502, 508
EarI	CTCTTC	3 cut(s)	145, 502, 508
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	615, 637
Eco147I	AGGCCT	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	373, 823
Eco47III	AGCGCT	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	605
EcoRI	GAATTC	2 cut(s)	81, 286
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	615, 637
ErhI	CCWWGG	2 cut(s)	615, 637
FaeI	CATG	5 cut(s)	61, 112, 317, 662, 830
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	5 cut(s)	57, 108, 313, 658, 826
Fnu4HI	GCNGC	3 cut(s)	492, 516, 519
FokI	GGATG	2 cut(s)	163, 632
Fsp4HI	GCNGC	3 cut(s)	492, 516, 519
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	492, 516, 519
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	105, 494
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	5 cut(s)	61, 112, 317, 662, 830
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	2 cut(s)	246, 412
HinfI	GANTC	4 cut(s)	42, 160, 323, 677
HpaI	GTTAAC	1 cut(s)	120
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	55, 120
Hpy188I	TCNGA	3 cut(s)	41, 459, 790
Hpy188III	TCNNGA	9 cut(s)	109, 218, 280, 314, 329, 607, 647, 683, 702
Hpy8I	GTNNAC	2 cut(s)	55, 120
HpyAV	CCTTC	6 cut(s)	344, 419, 556, 644, 734, 800
HpyCH4III	ACNGT	3 cut(s)	71, 193, 541
HpyCH4V	TGCA	5 cut(s)	142, 176, 392, 518, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	306, 605
Hsp92II	CATG	5 cut(s)	61, 112, 317, 662, 830
HspAI	GCGC	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	386, 454, 565, 696, 809
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	771
Lsp1109I	GCAGC	2 cut(s)	502, 530
LweI	GCATC	4 cut(s)	185, 220, 292, 610
MaeI	CTAG	1 cut(s)	768
MalI	GATC	5 cut(s)	388, 456, 567, 698, 811
MboI	GATC	5 cut(s)	386, 454, 565, 696, 809
MboII	GAAGA	9 cut(s)	162, 464, 489, 495, 546, 560, 599, 622, 815
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	3 cut(s)	386, 565, 696
MhlI	GDGCHC	2 cut(s)	262, 336
MluCI	AATT	4 cut(s)	81, 286, 582, 813
MmeI	TCCRAC	1 cut(s)	175
MseI	TTAA	5 cut(s)	12, 119, 201, 266, 536
MslI	CAYNNNNRTG	3 cut(s)	50, 228, 318
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	5 cut(s)	386, 454, 565, 696, 809
NlaIII	CATG	5 cut(s)	61, 112, 317, 662, 830
NlaIV	GGNNCC	1 cut(s)	824
OliI	CACNNNNGTG	1 cut(s)	50
PagI	TCATGA	2 cut(s)	108, 313
PaqCI	CACCTGC	1 cut(s)	345
PasI	CCCWGGG	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	42, 160, 323, 677
PkrI	GCNGC	3 cut(s)	493, 517, 520
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	2 cut(s)	373, 823
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	386, 565, 696
RsaI	GTAC	2 cut(s)	382, 430
RsaNI	GTAC	2 cut(s)	381, 429
RseI	CAYNNNNRTG	3 cut(s)	50, 228, 318
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	5 cut(s)	12, 119, 201, 266, 536
SatI	GCNGC	3 cut(s)	492, 516, 519
Sau3AI	GATC	5 cut(s)	386, 454, 565, 696, 809
Sau96I	GGNCC	2 cut(s)	373, 823
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	2 cut(s)	262, 336
SfaNI	GCATC	4 cut(s)	185, 220, 292, 610
SfcI	CTRYAG	2 cut(s)	24, 516
SinI	GGWCC	2 cut(s)	373, 823
SmiMI	CAYNNNNRTG	3 cut(s)	50, 228, 318
SmlI	CTYRAG	2 cut(s)	683, 700
SmoI	CTYRAG	2 cut(s)	683, 700
Sse9I	AATT	4 cut(s)	81, 286, 582, 813
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	5, 491
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	768
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	2 cut(s)	615, 637
TaaI	ACNGT	3 cut(s)	71, 193, 541
TasI	AATT	4 cut(s)	81, 286, 582, 813
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	4 cut(s)	42, 160, 323, 677
Tru1I	TTAA	5 cut(s)	12, 119, 201, 266, 536
Tru9I	TTAA	5 cut(s)	12, 119, 201, 266, 536
TscAI	CASTG	2 cut(s)	54, 630
TseI	GCWGC	2 cut(s)	515, 518
TspDTI	ATGAA	3 cut(s)	302, 330, 363
TspRI	CASTG	2 cut(s)	54, 630
VpaK11BI	GGWCC	2 cut(s)	373, 823
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	81, 286
XspI	CTAG	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.