Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

58188229 .. 58197309

Gene Structure 9081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG432700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCAATGGGGTGCTACTAATAAGCCTCAGGAACTAGATGACGCGGTTCTTAGGAGATTGAATGGAAGAGCAGAGAATCAGCAGGAGTTTGCATCCACTATGGGTCTCCTCCTTAGAACTGTTGGATTTAATCTTTATCCCTTTCAAGAGCATAATGATGCTGACATCTGGGAAGCTTTAGAGAGAGCACATTTAAAAGATACCATCAGGAGGAATTCTTTGGGGTTAGATGCTGAGGTCTCAGAGGCGGGAGAGAATTTTAGTGTTGGACAGAGGCAATTAGTAAGTCTTGGTCGAGCGCTGTTGTGGAGAACAAAAGTTATTGTTCTGGATGAAGCAACTGCAGCTGTTGATGTCAGAACTGATGCTCTTATTCAAAAGGCTATTGGTGAAGAGTTTAAGTCGTGTACAATGCTGACAATTGCTTATCGTCTAAATACTATAATTAACTCTGACCGAATCCTTCTGCTTGATGCTGGTCGGGTTCATGAATATGATTTTCCAGAGCACCTGCTGTCAAATGAAGGAAGCGCTTTCTCTAAAATGGTCCAAAGTACAGGATCTGCAAATGCTCAATATTTACGAAGCTTGGTAGTGGAAGGTACTAAAAACAAGTTTGGGAGAGAAGATCAGAACAAACAACTCTATGGACAGAGGAGATGGGCGGCCTCTTCCTCTTCTCCCTGGGCTGCAGCTACCCAGCTTGCCTTAACTGTTAGCCTGACTTCTTCACAGAAGGATCTTCAACTGCTGGAAATTGAAGATGAGAACAATATCCTCAGGAAGACCAAGGATGCAGTGATAACTCTCCAAGGAGTTCTGGAAGGGAAGCATGATAAAGTTATTGAGGAATCTCTTGAGCAATACCAGATCTCAAGAGATGGGTGGTGGTCAGCTCTATACAGAATGGTTGAAGGTCTTGCTGTGATGAGTAGGTTGGCTAGGAGCAGGGTTCAGCAATCAGAATGTGGTTTTGAAGAAGGATCAATTGATTGGGACCATGCTGACATTAGGAAACCTCTCTTTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

344

Amino Acids

38.8

Weight (kDa)

5.35

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	40 - 115	6.3e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	519
Acc36I	ACCTGC	1 cut(s)	519
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	44, 248, 665
AclWI	GGATC	3 cut(s)	568, 747, 991
AcsI	RAATTY	2 cut(s)	214, 256
AfaI	GTAC	3 cut(s)	409, 556, 604
AfeI	AGCGCT	2 cut(s)	300, 532
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	7 cut(s)	61, 146, 377, 746, 761, 914, 977
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	6 cut(s)	176, 347, 588, 695, 703, 896
AluI	AGCT	6 cut(s)	176, 347, 588, 695, 703, 896
Alw21I	GWGCWC	2 cut(s)	190, 510
Alw26I	GTCTC	2 cut(s)	110, 244
AlwI	GGATC	3 cut(s)	568, 747, 991
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor51HI	AGCGCT	2 cut(s)	300, 532
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	3 cut(s)	344, 689, 692
ApoI	RAATTY	2 cut(s)	214, 256
AspLEI	GCGC	2 cut(s)	301, 533
AspS9I	GGNCC	2 cut(s)	547, 997
AsuHPI	GGTGA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	547, 997
AxyI	CCTNAGG	2 cut(s)	27, 779
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	190, 510
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	356, 676, 704
BccI	CCATC	3 cut(s)	212, 654, 875
BciT130I	CCWGG	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	110, 244
BfaI	CTAG	2 cut(s)	35, 942
BfmI	CTRYAG	2 cut(s)	342, 690
BfoI	RGCGCY	2 cut(s)	302, 534
BfuAI	ACCTGC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	4 cut(s)	345, 666, 690, 693
BlsI	GCNGC	4 cut(s)	346, 667, 691, 694
Bme1390I	CCNGG	1 cut(s)	685
Bme18I	GGWCC	2 cut(s)	547, 997
BmgT120I	GGNCC	2 cut(s)	547, 997
BmiI	GGNNCC	1 cut(s)	998
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	6 cut(s)	101, 148, 220, 355, 463, 784
BpiI	GAAGAC	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	859, 878
BsaI	GGTCTC	2 cut(s)	110, 244
BsaJI	CCNNGG	4 cut(s)	683, 684, 789, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse21I	CCTNAGG	2 cut(s)	27, 779
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	683, 684, 789, 811
BseGI	GGATG	3 cut(s)	92, 337, 799
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	4 cut(s)	41, 225, 255, 793
BseRI	GAGGAG	2 cut(s)	98, 670
BseXI	GCAGC	3 cut(s)	356, 676, 704
BseYI	CCCAGC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	668
BsiHKAI	GWGCWC	2 cut(s)	190, 510
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	110, 244
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	668
Bso31I	GGTCTC	2 cut(s)	110, 244
Bsp1286I	GDGCHC	2 cut(s)	190, 510
Bsp1407I	TGTACA	1 cut(s)	407
Bsp143I	GATC	5 cut(s)	560, 628, 739, 870, 983
BspACI	CCGC	3 cut(s)	44, 248, 665
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	4 cut(s)	40, 226, 254, 792
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	998
BspMAI	CTGCAG	2 cut(s)	346, 694
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	3 cut(s)	568, 747, 991
BspQI	GCTCTTC	1 cut(s)	61
BspTNI	GGTCTC	2 cut(s)	110, 244
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	683, 684, 789, 811
BssMI	GATC	5 cut(s)	560, 628, 739, 870, 983
BssT1I	CCWWGG	2 cut(s)	789, 811
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	121, 715
Bst6I	CTCTTC	4 cut(s)	61, 387, 676, 682
BstAUI	TGTACA	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	6 cut(s)	27, 50, 113, 234, 241, 779
BstF5I	GGATG	3 cut(s)	92, 337, 799
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	2 cut(s)	302, 534
BstHHI	GCGC	2 cut(s)	301, 533
BstKTI	GATC	5 cut(s)	563, 631, 742, 873, 986
BstMAI	GTCTC	2 cut(s)	110, 244
BstMBI	GATC	5 cut(s)	560, 628, 739, 870, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	683
BstSFI	CTRYAG	2 cut(s)	342, 690
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	356, 676, 704
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	3 cut(s)	560, 739, 870
BstYI	RGATCY	3 cut(s)	560, 739, 870
Bsu36I	CCTNAGG	2 cut(s)	27, 779
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	3 cut(s)	92, 337, 799
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	1 cut(s)	804
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	705
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	301, 533
Cfr13I	GGNCC	2 cut(s)	547, 997
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	408, 555, 603
CviAII	CATG	3 cut(s)	488, 833, 1001
CviQI	GTAC	3 cut(s)	408, 555, 603
DdeI	CTNAG	6 cut(s)	27, 50, 113, 234, 241, 779
DpnI	GATC	5 cut(s)	562, 630, 741, 872, 985
DpnII	GATC	5 cut(s)	560, 628, 739, 870, 983
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	4 cut(s)	61, 387, 676, 682
EarI	CTCTTC	4 cut(s)	61, 387, 676, 682
Eco130I	CCWWGG	2 cut(s)	789, 811
Eco31I	GGTCTC	2 cut(s)	110, 244
Eco47I	GGWCC	2 cut(s)	547, 997
Eco47III	AGCGCT	2 cut(s)	300, 532
Eco81I	CCTNAGG	2 cut(s)	27, 779
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	789, 811
ErhI	CCWWGG	2 cut(s)	789, 811
FaeI	CATG	3 cut(s)	491, 836, 1004
FaiI	YATR	9 cut(s)	101, 153, 443, 489, 495, 648, 834, 901, 1002
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	3 cut(s)	487, 832, 1000
FauI	CCCGC	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	345, 666, 690, 693
FokI	GGATG	3 cut(s)	79, 344, 806
Fsp4HI	GCNGC	4 cut(s)	345, 666, 690, 693
FspBI	CTAG	2 cut(s)	35, 942
GlaI	GCGC	2 cut(s)	300, 532
GluI	GCNGC	4 cut(s)	345, 666, 690, 693
GsaI	CCCAGC	1 cut(s)	703
HaeII	RGCGCY	2 cut(s)	302, 534
HaeIII	GGCC	1 cut(s)	668
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	301, 533
Hin1II	CATG	3 cut(s)	491, 836, 1004
Hin6I	GCGC	2 cut(s)	299, 531
HinP1I	GCGC	2 cut(s)	299, 531
HindIII	AAGCTT	2 cut(s)	174, 586
HinfI	GANTC	3 cut(s)	76, 459, 851
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	5 cut(s)	244, 359, 454, 633, 964
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	7 cut(s)	473, 518, 593, 730, 818, 908, 974
HpyCH4III	ACNGT	2 cut(s)	121, 715
HpyCH4V	TGCA	6 cut(s)	4, 92, 344, 566, 692, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	6 cut(s)	27, 50, 113, 234, 241, 779
Hsp92II	CATG	3 cut(s)	491, 836, 1004
HspAI	GCGC	2 cut(s)	299, 531
Kzo9I	GATC	5 cut(s)	560, 628, 739, 870, 983
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	945
Lsp1109I	GCAGC	3 cut(s)	356, 676, 704
LweI	GCATC	6 cut(s)	101, 148, 220, 355, 463, 784
MaeI	CTAG	2 cut(s)	35, 942
MalI	GATC	5 cut(s)	562, 630, 741, 872, 985
MboI	GATC	5 cut(s)	560, 628, 739, 870, 983
MfeI	CAATTG	2 cut(s)	420, 987
MflI	RGATCY	3 cut(s)	560, 739, 870
MhlI	GDGCHC	2 cut(s)	190, 510
MluCI	AATT	7 cut(s)	214, 256, 278, 420, 444, 756, 987
MmeI	TCCRAC	2 cut(s)	103, 247
MseI	TTAA	5 cut(s)	129, 194, 399, 447, 710
MslI	CAYNNNNRTG	2 cut(s)	156, 492
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	685
MunI	CAATTG	2 cut(s)	420, 987
MvaI	CCWGG	1 cut(s)	685
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	5 cut(s)	560, 628, 739, 870, 983
NlaIII	CATG	3 cut(s)	491, 836, 1004
NlaIV	GGNNCC	1 cut(s)	998
PagI	TCATGA	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	519
PasI	CCCWGGG	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	76, 459, 851
PkrI	GCNGC	4 cut(s)	346, 667, 691, 694
Psp6I	CCWGG	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	998
PspPI	GGNCC	2 cut(s)	547, 997
PstI	CTGCAG	2 cut(s)	346, 694
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	3 cut(s)	560, 739, 870
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	409, 556, 604
RsaNI	GTAC	3 cut(s)	408, 555, 603
RseI	CAYNNNNRTG	2 cut(s)	156, 492
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	5 cut(s)	129, 194, 399, 447, 710
SatI	GCNGC	4 cut(s)	345, 666, 690, 693
Sau3AI	GATC	5 cut(s)	560, 628, 739, 870, 983
Sau96I	GGNCC	2 cut(s)	547, 997
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	2 cut(s)	190, 510
SfaNI	GCATC	6 cut(s)	101, 148, 220, 355, 463, 784
SfcI	CTRYAG	2 cut(s)	342, 690
SinI	GGWCC	2 cut(s)	547, 997
SmiMI	CAYNNNNRTG	2 cut(s)	156, 492
SmlI	CTYRAG	2 cut(s)	857, 874
SmoI	CTYRAG	2 cut(s)	857, 874
Sse9I	AATT	7 cut(s)	214, 256, 278, 420, 444, 756, 987
SsiI	CCGC	3 cut(s)	44, 248, 665
SspI	AATATT	1 cut(s)	578
SspMI	CTAG	2 cut(s)	35, 942
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	2 cut(s)	789, 811
TaaI	ACNGT	2 cut(s)	121, 715
TaqI	TCGA	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	7 cut(s)	214, 256, 278, 420, 444, 756, 987
TatI	WGTACW	2 cut(s)	407, 554
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	3 cut(s)	76, 459, 851
Tru1I	TTAA	5 cut(s)	129, 194, 399, 447, 710
Tru9I	TTAA	5 cut(s)	129, 194, 399, 447, 710
TscAI	CASTG	1 cut(s)	804
TseI	GCWGC	3 cut(s)	344, 689, 692
TspDTI	ATGAA	4 cut(s)	348, 476, 504, 537
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	2 cut(s)	547, 997
XapI	RAATTY	2 cut(s)	214, 256
XspI	CTAG	2 cut(s)	35, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.