Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

11272246 .. 11273067

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG119900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTCGTTATTGCTCACAGATTGAACACCATTATCGACTGTGATAGAATTCTTGTTCTTGATGCTGGTCAGGTCCTAGAACATGGTTCCCCAGAAGAACTACTGCTAAACGAAGAGAGCGCATTCTCCAAGATGGTCAGGAGTACAGGACCTTCTAATGCTCAGTACTTACGCAGCCTGGTATTTGAAGGCAAGCAGAATAAGGTGAATATAGATGAAGCCGAGCAACTAGTTGGCCAGAGTCAGAGGAGATGGTTAGCCTCTTCGCGCTGGGCAGCTGCTGCCCAATTTGCCTTGGCTGTTAGTCTCACATCCTCACAGAATGATCTCCAAAGGTTAGATATTGGAGACGAGGACAATATCCTCATGAAAACAAAAGATGCAGTTATAACACTGCAGGGAGTTCTGGAAGGAAAGCATGATAAAGATATAGACATATCACTAAATCAGCACCATATTCCAAGGGAGGGGTGGTGGTCAGCTTTCTTCAGAATAGTTGAAGGTCTGGCCGTGATGGGCAGGCTGGCTCAGAACAGACTCCACCCTTTAGAAGATGACGATTTTGAAGACCAGTCTTTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

194

Amino Acids

21.88

Weight (kDa)

4.92

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AccII	CGCG	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	235, 507
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	2 cut(s)	145, 167
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	25, 188, 500, 566
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	278, 482
AluI	AGCT	2 cut(s)	278, 482
Alw26I	GTCTC	2 cut(s)	311, 342
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	235, 507
ApeKI	GCWGC	4 cut(s)	174, 275, 278, 281
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	122, 270
AspS9I	GGNCC	2 cut(s)	73, 149
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	73, 149
BalI	TGGCCA	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	186, 265, 268, 287
BccI	CCATC	3 cut(s)	127, 246, 508
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	311, 342
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	3 cut(s)	77, 230, 583
BfmI	CTRYAG	1 cut(s)	395
BisI	GCNGC	4 cut(s)	175, 276, 279, 282
BlsI	GCNGC	4 cut(s)	176, 277, 280, 283
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	2 cut(s)	73, 149
BmgT120I	GGNCC	2 cut(s)	73, 149
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	52, 370
BpiI	GAAGAC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	294, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	294, 461
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	176, 542
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	186, 265, 268, 287
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	237, 509
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	311, 342
BsmBI	CGTCTC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	237, 509
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	237, 509
BspCNI	CTCAG	2 cut(s)	175, 541
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	294, 461
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	2 cut(s)	294, 461
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	108, 268
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	194, 521, 525
BstDEI	CTNAG	2 cut(s)	162, 528
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	122, 270
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	311, 342
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 290
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	4 cut(s)	186, 265, 268, 287
BstV2I	GAAGAC	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	237, 509
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	3 cut(s)	194, 521, 525
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	122, 270
Cfr13I	GGNCC	2 cut(s)	73, 149
Csp6I	GTAC	2 cut(s)	144, 166
CviAII	CATG	3 cut(s)	83, 367, 419
CviQI	GTAC	2 cut(s)	144, 166
DdeI	CTNAG	2 cut(s)	162, 528
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	2 cut(s)	235, 507
Eam1104I	CTCTTC	2 cut(s)	108, 268
EarI	CTCTTC	2 cut(s)	108, 268
Eco130I	CCWWGG	2 cut(s)	294, 461
Eco47I	GGWCC	2 cut(s)	73, 149
Eco57I	CTGAAG	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	73, 149
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	294, 461
ErhI	CCWWGG	2 cut(s)	294, 461
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	3 cut(s)	86, 370, 422
FaiI	YATR	9 cut(s)	84, 212, 368, 389, 420, 431, 437, 456, 580
FatI	CATG	3 cut(s)	82, 366, 418
Fnu4HI	GCNGC	4 cut(s)	175, 276, 279, 282
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	175, 276, 279, 282
FspBI	CTAG	3 cut(s)	77, 230, 583
GlaI	GCGC	2 cut(s)	121, 269
GluI	GCNGC	4 cut(s)	175, 276, 279, 282
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	237, 509
HhaI	GCGC	2 cut(s)	122, 270
Hin1II	CATG	3 cut(s)	86, 370, 422
Hin6I	GCGC	2 cut(s)	120, 268
HinP1I	GCGC	2 cut(s)	120, 268
HinfI	GANTC	2 cut(s)	241, 537
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	246, 491, 531
Hpy188III	TCNNGA	4 cut(s)	59, 139, 367, 407
HpyAV	CCTTC	4 cut(s)	162, 182, 404, 494
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	383, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 290
HpyF3I	CTNAG	2 cut(s)	162, 528
Hsp92II	CATG	3 cut(s)	86, 370, 422
HspAI	GCGC	2 cut(s)	120, 268
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	4 cut(s)	186, 265, 268, 287
LweI	GCATC	2 cut(s)	52, 370
MaeI	CTAG	3 cut(s)	77, 230, 583
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	6 cut(s)	107, 125, 255, 478, 563, 578
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	2 cut(s)	48, 287
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	250, 531
MnlI	CCTC	6 cut(s)	240, 271, 325, 346, 374, 460
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	281, 290
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	86, 370, 422
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	247
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	176, 277, 280, 283
PleI	GAGTC	2 cut(s)	249, 531
PpsI	GAGTC	2 cut(s)	249, 531
PpuMI	RGGWCCY	2 cut(s)	73, 149
PsiI	TTATAA	1 cut(s)	389
Psp5II	RGGWCCY	2 cut(s)	73, 149
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	73, 149
PspPPI	RGGWCCY	2 cut(s)	73, 149
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	145, 167
RsaNI	GTAC	2 cut(s)	144, 166
SatI	GCNGC	4 cut(s)	175, 276, 279, 282
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	73, 149
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	250, 531
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	7 cut(s)	75, 154, 207, 280, 338, 484, 505
SfaNI	GCATC	2 cut(s)	52, 370
SfcI	CTRYAG	1 cut(s)	395
SinI	GGWCC	2 cut(s)	73, 149
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	2 cut(s)	48, 287
SspMI	CTAG	3 cut(s)	77, 230, 583
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	294, 461
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	48, 287
TatI	WGTACW	2 cut(s)	143, 165
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	4 cut(s)	174, 275, 278, 281
TspDTI	ATGAA	2 cut(s)	231, 383
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	73, 149
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XspI	CTAG	3 cut(s)	77, 230, 583
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.