Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8080046.1

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

142 .. 555

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8080046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgggtctacttctcactgatacttttaatatcacaagtctgtcgagtgatgttctgagacaagcaagcagggctgaaaatagtttaaatgctgttgagcgggttggaagatatatagatttgccttctgaggctccagctgttattgaaagcaacggtcccccacatgggtggccatcaacaggatcaatcaagtttgaggatgttgtcctctgttataggcctggactcccaccagtgctgcacggattatcatttacagtttctgcaagtgagaagctaggaatggttggaagaactgttgctggcaaatctagcatgattaatgcattgtttagaatagtagaaatagaaaaaggaagcattttgattgatagttgtgatgtttctaagtttggactggaagatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

137

Amino Acids

14.68

Weight (kDa)

5.1

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	167, 168, 182
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	140, 280
AluI	AGCT	2 cut(s)	140, 280
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	173, 221
ApeKI	GCWGC	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	281, 315
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	135, 160
BmrFI	CCNGG	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 168, 182
Bse1I	ACTGG	2 cut(s)	236, 405
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	167, 168, 182
BseMII	CTCAG	2 cut(s)	47, 120
BseNI	ACTGG	2 cut(s)	236, 405
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	175, 223
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	167, 168, 182
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	175, 223
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	175, 223
BspCNI	CTCAG	2 cut(s)	48, 121
BspLI	GGNNCC	2 cut(s)	135, 160
BspPI	GGATC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	236, 405
BssMI	GATC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	158, 262, 301
BstC8I	GCNNGC	2 cut(s)	67, 307
BstDEI	CTNAG	3 cut(s)	56, 129, 390
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 315
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	175, 223
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	15, 243
Cac8I	GCNNGC	2 cut(s)	67, 307
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	167, 319
CviJI	RGCY	6 cut(s)	74, 134, 140, 175, 223, 280
CviKI_1	RGCY	6 cut(s)	74, 134, 140, 175, 223, 280
DdeI	CTNAG	3 cut(s)	56, 129, 390
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DraI	TTTAAA	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	2 cut(s)	170, 322
FaiI	YATR	6 cut(s)	114, 116, 168, 219, 320, 412
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	2 cut(s)	166, 318
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	2 cut(s)	281, 315
GluI	GCNGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	175, 223
Hin1II	CATG	2 cut(s)	170, 322
HinfI	GANTC	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	57, 130
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	3 cut(s)	158, 262, 301
HpyCH4V	TGCA	3 cut(s)	244, 269, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 315
HpyF3I	CTNAG	3 cut(s)	56, 129, 390
Hsp92II	CATG	2 cut(s)	170, 322
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	55, 150, 168, 210, 237, 249, 291, 386
Lsp1109I	GCAGC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	281, 315
MalI	GATC	1 cut(s)	187
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	120, 306
MlsI	TGGCCA	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	85, 271
MnlI	CCTC	3 cut(s)	124, 193, 221
Mox20I	TGGCCA	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	3 cut(s)	27, 86, 324
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	71, 315
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	170, 322
NlaIV	GGNNCC	2 cut(s)	135, 160
NsiI	ATGCAT	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	135, 160
PspPI	GGNCC	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	27, 86, 324
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	2 cut(s)	142, 282
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	281, 315
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	158, 262, 301
TaqI	TCGA	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	27, 86, 324
Tru9I	TTAA	3 cut(s)	27, 86, 324
TscAI	CASTG	2 cut(s)	22, 243
TseI	GCWGC	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	22, 243
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	2 cut(s)	281, 315
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.