Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

12275576 .. 12279358

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAATATCTGTCTTGTTGGCAGGTACAAACATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACTTGTTATACTGTAACAGAAGTTCTTCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGACCAAAGCACGTCAAAGAGCTATACACCTGGATTCTACATTCTTATATATGCAATTCTTTCAATTGGACAGAGCACATCCCGTGAAGTGAAACGCTTGGATTCCATTACCAGATCTCCTGTTTATGCACAATTTGGAGAAGTATTAAATGGTTTGTCATCAATTCGTGCCTATCAAGCTTATGCTCGGACGGCAAACATTAGTGGAAGGTCTATGGATAATAATATCAGATTCACTCTTGTGAAATTTAGTTCAAGCCACTGGCTTGATCGATATAAGGTTGGAAACACTAGGAGGTATCATGATTTGGGTGATAGCAACCTTTGCTGTCATGCAGAATGGAAAAGCAGAAAACCAAGCTCAACTGCTGGGGGATGGCTGTGTGGATTGGTTTTGGCCACGGGATGCGTACGGTTCAGGTTGGGTCGAGGTGTCTTTGGTGGAGCGGTCTTCCGGTGTGCTACGGAGACGGTGACTTCGGTGGATAACAATGGCGGCTTCGACGACGTTTTGACTCGTGGTGTTTGGCTGATCATGGTGGATGGGTTTGGTGTTTGGGCTTTGTCCTTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

235

Amino Acids

26.09

Weight (kDa)

9.46

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	578
AciI	CCGC	2 cut(s)	578, 627
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	2 cut(s)	26, 543
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	105, 195, 387
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	153, 311, 492
AluI	AGCT	3 cut(s)	153, 311, 492
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	593
AoxI	GGCC	2 cut(s)	43, 528
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	455, 616
BalI	TGGCCA	1 cut(s)	530
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	501, 668
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	12
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	2 cut(s)	109, 628
BlsI	GCNGC	2 cut(s)	110, 629
Bme1390I	CCNGG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	531, 699
BsaWI	WCCGGW	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	531, 699
BseGI	GGATG	4 cut(s)	209, 512, 542, 679
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	2 cut(s)	45, 530
BshVI	ATCGAT	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	586
BsiWI	CGTACG	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	593
BsmBI	CGTCTC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	45, 530
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	245, 400, 663
BspACI	CCGC	2 cut(s)	578, 627
BspANI	GGCC	2 cut(s)	45, 530
BspDI	ATCGAT	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	531, 699
BssMI	GATC	3 cut(s)	245, 400, 663
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	82, 546, 604
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	4 cut(s)	209, 512, 542, 679
BstKTI	GATC	3 cut(s)	248, 403, 666
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	3 cut(s)	245, 400, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 323, 456
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	45, 530
BsuTUI	ATCGAT	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	531
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	4 cut(s)	209, 512, 542, 679
BtsIMutI	CAGTG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	25, 542
CviAII	CATG	6 cut(s)	32, 58, 114, 434, 464, 667
CviQI	GTAC	2 cut(s)	25, 542
DpnI	GATC	3 cut(s)	247, 402, 665
DpnII	GATC	3 cut(s)	245, 400, 663
EaeI	YGGCCR	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	699
Eco147I	AGGCCT	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	593
FaeI	CATG	6 cut(s)	35, 61, 117, 437, 467, 670
FatI	CATG	6 cut(s)	31, 57, 113, 433, 463, 666
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	109, 628
FokI	GGATG	4 cut(s)	196, 519, 549, 686
Fsp4HI	GCNGC	2 cut(s)	109, 628
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	109, 628
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	45, 530
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	6 cut(s)	35, 61, 117, 437, 467, 670
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	4 cut(s)	165, 233, 363, 646
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	2 cut(s)	455, 616
Hpy188I	TCNGA	2 cut(s)	321, 362
Hpy188III	TCNNGA	1 cut(s)	434
Hpy99I	CGWCG	2 cut(s)	638, 641
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	3 cut(s)	82, 546, 604
HpyCH4IV	ACGT	2 cut(s)	143, 639
HpyCH4V	TGCA	4 cut(s)	35, 185, 260, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 323, 456
HpySE526I	ACGT	2 cut(s)	143, 639
Hsp92II	CATG	6 cut(s)	35, 61, 117, 437, 467, 670
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	3 cut(s)	245, 400, 663
LmnI	GCTCC	1 cut(s)	575
LpnPI	CCDG	9 cut(s)	7, 147, 174, 256, 264, 379, 486, 535, 599
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	143, 639
MaeIII	GTNAC	2 cut(s)	82, 604
MalI	GATC	3 cut(s)	247, 402, 665
MbiI	CCGCTC	1 cut(s)	578
MboI	GATC	3 cut(s)	245, 400, 663
MboII	GAAGA	2 cut(s)	86, 574
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	5 cut(s)	186, 195, 263, 294, 377
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	3 cut(s)	35, 420, 554
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	2 cut(s)	119, 278
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	308, 323, 456
NdeII	GATC	3 cut(s)	245, 400, 663
NlaIII	CATG	6 cut(s)	35, 61, 117, 437, 467, 670
NmuCI	GTSAC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	165, 233, 363
Pfl23II	CGTACG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	110, 629
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	160
PspLI	CGTACG	1 cut(s)	541
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	26, 543
RsaNI	GTAC	2 cut(s)	25, 542
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	119, 278
SatI	GCNGC	2 cut(s)	109, 628
Sau3AI	GATC	3 cut(s)	245, 400, 663
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	186, 195, 263, 294, 377
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	578, 627
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	82, 546, 604
TaiI	ACGT	2 cut(s)	146, 642
TaqI	TCGA	4 cut(s)	97, 403, 559, 633
TasI	AATT	5 cut(s)	186, 195, 263, 294, 377
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	3 cut(s)	165, 233, 363
Tru1I	TTAA	2 cut(s)	119, 278
Tru9I	TTAA	2 cut(s)	119, 278
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.