Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033460.1

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 545

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033460.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgctcgttattgctcacagattgaacaccattatcgactgtgatcaaattcttgtccttgatgctggtcaagtcctagaacatggttccccagaacaactactgttaaacgaagatagcccattctccaaaatggtcagtagtatagggccttgtaatgctctatacttacgcagcctggtattcgaaggcaagcagaataaggtgaatagagaccagcaactggttggccagagccgcaggagatggttagcctcttcgcgctgggccgctgctgcccaatttgctttgaccgttagtctcgcatcctcacagagcgatctccaaaggttagatattgtagacgaggacaatatcctcatgaaaacaaaggatgcagttataaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

5.59

Isoelectric Point (pI)

73.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	262
AciI	CCGC	2 cut(s)	238, 270
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	25
AhdI	GACNNNNNGTC	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	207, 305
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	3 cut(s)	149, 229, 267
ApeKI	GCWGC	3 cut(s)	174, 272, 275
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	149, 267
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	186, 259, 262
BccI	CCATC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	207, 305
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	5 cut(s)	175, 238, 270, 273, 276
BlsI	GCNGC	5 cut(s)	176, 239, 271, 274, 277
Bme1390I	CCNGG	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	149, 267
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	52, 314, 364
Bpu14I	TTCGAA	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	305, 379
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	186, 259, 262
BseYI	CCCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	151, 231, 269
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	207, 305
BsnI	GGCC	3 cut(s)	151, 231, 269
Bso31I	GGTCTC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	43, 319
BspACI	CCGC	2 cut(s)	238, 270
BspANI	GGCC	3 cut(s)	151, 231, 269
BspFNI	CGCG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	43, 319
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	41, 105, 295
Bst6I	CTCTTC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	305, 379
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	46, 322
BstMAI	GTCTC	2 cut(s)	207, 305
BstMBI	GATC	2 cut(s)	43, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 275, 284
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	186, 259, 262
BsuRI	GGCC	3 cut(s)	151, 231, 269
BtsCI	GGATG	2 cut(s)	305, 379
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	149, 267
CviAII	CATG	2 cut(s)	83, 361
CviJI	RGCY	7 cut(s)	120, 151, 177, 231, 237, 254, 269
CviKI_1	RGCY	7 cut(s)	120, 151, 177, 231, 237, 254, 269
DpnI	GATC	2 cut(s)	45, 321
DpnII	GATC	2 cut(s)	43, 319
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	86, 364
FaiI	YATR	5 cut(s)	84, 146, 166, 362, 383
FatI	CATG	2 cut(s)	82, 360
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	175, 238, 270, 273, 276
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	5 cut(s)	175, 238, 270, 273, 276
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	5 cut(s)	175, 238, 270, 273, 276
GsaI	CCCAGC	1 cut(s)	268
HaeIII	GGCC	3 cut(s)	151, 231, 269
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	86, 364
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	41, 105, 295
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 275, 284
Hsp92II	CATG	2 cut(s)	86, 364
HspAI	GCGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	43, 319
LpnPI	CCDG	9 cut(s)	51, 105, 164, 191, 209, 226, 230, 245, 250
Lsp1109I	GCAGC	3 cut(s)	186, 259, 262
LweI	GCATC	3 cut(s)	52, 314, 364
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	45, 321
MboI	GATC	2 cut(s)	43, 319
MboII	GAAGA	2 cut(s)	125, 249
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	2 cut(s)	48, 281
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	4 cut(s)	265, 319, 340, 368
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	237, 275, 284
NdeII	GATC	2 cut(s)	43, 319
NlaIII	CATG	2 cut(s)	86, 364
NlaIV	GGNNCC	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	186
PagI	TCATGA	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	176, 239, 271, 274, 277
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	149, 267
PstNI	CAGNNNCTG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	5 cut(s)	175, 238, 270, 273, 276
Sau3AI	GATC	2 cut(s)	43, 319
Sau96I	GGNCC	2 cut(s)	149, 267
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	2 cut(s)	207, 332
SfaNI	GCATC	3 cut(s)	52, 314, 364
SfuI	TTCGAA	1 cut(s)	186
Sse9I	AATT	2 cut(s)	48, 281
SsiI	CCGC	2 cut(s)	238, 270
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	41, 105, 295
TaqI	TCGA	2 cut(s)	36, 186
TasI	AATT	2 cut(s)	48, 281
TauI	GCSGC	2 cut(s)	240, 272
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	3 cut(s)	174, 272, 275
TspDTI	ATGAA	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.