Rroxscaffold_3G00254760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005937
Physical Location & Seq
Forward (+)
49059794 .. 49069865
10072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254760.1

Sequence Viewer

Length: 633 bp
ATGCAACAAATTCTAGAAAGAAAATTTAAGGAACAGAATTTTTATTATCCTTTTCCTCACCAGCAATCGCACGCGGGCTCTGGTTGGTTGGTCCGCAATAGTCTATGTTTGTATTTCCATTCCCTTGATGACCTGGACCCCACAACCGACCCTAGACAATACGGACAGCGACGCCTCTCCCCTCAACGGCTCGGCTCGGCTCGGCTCGGCTCGGCTCAAGCCGGTCGTTCGAGCCAGGTGAGACAGTGCGACATTGAGAGTCAGGTCGTTTCGCTCTTGGTTGTTCATAGATGCGTCAATGACCGTCATAAGAAAATGAAGACAGCAAAGGCTCTCAGACTAGGCCCAGCCCGAACAGAACCACACTTGCCATCTTCAAGTAAGTCACTCCGCAGCAAGACTCATCCAGCAGATTTCAAGTCTTGTTCAGGAGTGAAAGATGTACAAGATTGGAACATGGAATGTGTGACAAAGGATGAAATTGCTCCGAACTCGAACCCATGGACCACCAGACTCCGTCACGGCCCGCTTCACTCTCGGCAAATAGTCCTCGCTCGCCCCCGACCACGGGGTGACTTGGAAGGCATTCGGGAGCTCTTGGACTCCGAACCAACGTCAATTTCACCGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.87

Weight (kDa)

9.77

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 74, 94, 391, 527
AcsI RAATTY 3 cut(s) 9, 23, 37
AcyI GRCGYC 1 cut(s) 172
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 3 cut(s) 186, 567, 568
AgsI TTSAA 2 cut(s) 378, 418
AjnI CCWGG 2 cut(s) 132, 234
AjuI GAANNNNNNNTTGG 1 cut(s) 604
AluBI AGCT 1 cut(s) 595
AluI AGCT 1 cut(s) 595
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 1 cut(s) 235
AoxI GGCC 2 cut(s) 343, 523
ApeKI GCWGC 1 cut(s) 393
ApoI RAATTY 3 cut(s) 9, 23, 37
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 5 cut(s) 91, 136, 344, 504, 524
AsuHPI GGTGA 4 cut(s) 50, 250, 584, 615
AvaII GGWCC 3 cut(s) 91, 136, 504
BanII GRGCYC 2 cut(s) 80, 597
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 405
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 203, 538
BciT130I CCWGG 2 cut(s) 134, 236
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 3 cut(s) 14, 153, 341
BisI GCNGC 1 cut(s) 394
BlsI GCNGC 1 cut(s) 395
Bme1390I CCNGG 2 cut(s) 134, 236
Bme18I GGWCC 3 cut(s) 91, 136, 504
BmgT120I GGNCC 5 cut(s) 91, 136, 344, 504, 524
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 134, 236
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 500, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 567, 568
Bse118I RCCGGY 1 cut(s) 221
BseBI CCWGG 2 cut(s) 134, 236
BseDI CCNNGG 2 cut(s) 500, 566
BseGI GGATG 2 cut(s) 403, 481
BseLI CCNNNNNNNGG 3 cut(s) 186, 567, 568
BseMII CTCAG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 405
BseYI CCCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 345, 525
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 3 cut(s) 186, 567, 568
BsmAI GTCTC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 2 cut(s) 345, 525
Bsp1286I GDGCHC 2 cut(s) 80, 597
Bsp1407I TGTACA 1 cut(s) 442
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 4 cut(s) 74, 94, 391, 527
BspANI GGCC 2 cut(s) 345, 525
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 500, 566
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 500
Bst2UI CCWGG 2 cut(s) 134, 236
Bst4CI ACNGT 2 cut(s) 246, 305
BstACI GRCGYC 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 4 cut(s) 72, 76, 527, 556
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 2 cut(s) 500, 566
BstF5I GGATG 2 cut(s) 403, 481
BstFNI CGCG 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 226
BstNI CCWGG 2 cut(s) 134, 236
BstSCI CCNGG 2 cut(s) 132, 234
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 345, 525
BtgI CCRYGG 2 cut(s) 500, 566
BtsCI GGATG 2 cut(s) 403, 481
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 4 cut(s) 72, 76, 527, 556
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 5 cut(s) 91, 136, 344, 504, 524
CseI GACGC 2 cut(s) 180, 283
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 457, 501
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 335
DraIII CACNNNGTG 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 500
Eco24I GRGCYC 2 cut(s) 80, 597
Eco47I GGWCC 3 cut(s) 91, 136, 504
Eco53kI GAGCTC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 132, 234
EcoT14I CCWWGG 1 cut(s) 500
EcoT38I GRGCYC 2 cut(s) 80, 597
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 2 cut(s) 460, 504
FaiI YATR 6 cut(s) 106, 288, 309, 458, 502, 631
FatI CATG 2 cut(s) 456, 500
FauI CCCGC 2 cut(s) 67, 534
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 2 cut(s) 390, 488
FriOI GRGCYC 2 cut(s) 80, 597
Fsp4HI GCNGC 1 cut(s) 394
FspBI CTAG 3 cut(s) 14, 153, 341
GluI GCNGC 1 cut(s) 394
GsaI CCCAGC 1 cut(s) 350
HaeIII GGCC 2 cut(s) 345, 525
HapII CCGG 1 cut(s) 222
HgaI GACGC 2 cut(s) 180, 283
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 2 cut(s) 460, 504
HinfI GANTC 4 cut(s) 259, 400, 513, 602
HpaII CCGG 1 cut(s) 222
HphI GGTGA 4 cut(s) 50, 250, 584, 615
Hpy188I TCNGA 3 cut(s) 338, 489, 607
Hpy188III TCNNGA 3 cut(s) 14, 429, 590
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 2 cut(s) 246, 305
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 2 cut(s) 460, 504
LmnI GCTCC 2 cut(s) 490, 592
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 281
MaeI CTAG 3 cut(s) 14, 153, 341
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 4 cut(s) 384, 466, 518, 572
MboII GAAGA 2 cut(s) 331, 366
MhlI GDGCHC 2 cut(s) 80, 597
MluCI AATT 5 cut(s) 9, 23, 37, 480, 618
MlyI GAGTC 4 cut(s) 268, 394, 507, 596
MnlI CCTC 4 cut(s) 66, 185, 192, 560
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 134, 236
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 134, 236
MvnI CGCG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 500
NlaIII CATG 2 cut(s) 460, 504
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 6 cut(s) 171, 176, 181, 186, 191, 517
NmuCI GTSAC 4 cut(s) 384, 466, 518, 572
PctI GAATGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 585
PflFI GACNNNGTC 1 cut(s) 516
PkrI GCNGC 1 cut(s) 395
PleI GAGTC 4 cut(s) 267, 394, 507, 596
PpsI GAGTC 4 cut(s) 267, 394, 507, 596
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 132, 234
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 132, 234
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 5 cut(s) 91, 136, 344, 504, 524
PsyI GACNNNGTC 1 cut(s) 516
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 394
Sau96I GGNCC 5 cut(s) 91, 136, 344, 504, 524
SchI GAGTC 4 cut(s) 268, 394, 507, 596
ScrFI CCNGG 2 cut(s) 134, 236
SduI GDGCHC 2 cut(s) 80, 597
SetI ASST 5 cut(s) 135, 240, 267, 597, 617
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 3 cut(s) 91, 136, 504
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 5 cut(s) 9, 23, 37, 480, 618
SsiI CCGC 4 cut(s) 74, 94, 391, 527
SspMI CTAG 3 cut(s) 14, 153, 341
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 132, 234
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 2 cut(s) 246, 305
TaiI ACGT 1 cut(s) 617
TaqI TCGA 2 cut(s) 230, 494
TasI AATT 5 cut(s) 9, 23, 37, 480, 618
TatI WGTACW 1 cut(s) 442
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 4 cut(s) 384, 466, 518, 572
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 4 cut(s) 384, 466, 518, 572
TspDTI ATGAA 3 cut(s) 275, 332, 492
TspGWI ACGGA 2 cut(s) 177, 506
TspRI CASTG 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 516
VpaK11BI GGWCC 3 cut(s) 91, 136, 504
XapI RAATTY 3 cut(s) 9, 23, 37
XbaI TCTAGA 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 3 cut(s) 14, 153, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.