Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

37129520 .. 37131448

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG301400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAAAATGCCGGAAAAATGGAAGTACATGTAGAAGAAAAGGAAGACAGCAAAACTGATCACCTGCAGGAAAGCTCACTTCATGTGTCTTATGGGGTGGTGAATGACTTGCCAGAAGATGCAAGCTACACAAAGAAACGGAAAGGGATGAGATCTGTACTCATTAAACAAGAGGAACGGGAAACAGTGTTGTACAAACATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACTTGTTATACTGTAACAGAAGTTCTTCCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGATCAAATCACGTCAAAGAGTTATGCACCTGGATTCTACATTCTTATATATGCAAATATTCTTTCAATTGGTCAGGCATTGTGAGCACATTATCTCTCTGGGCCATAATGCCACTTCTAATTTTGTTCCATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCTTGGATTCCATTACCAGATCTCCTGTTTATGCACAATTTGGAGAAGCATTAAATGGTTTATCATCAATTCGTGCCTATCAAGCTTATGATCGGACGGGTACGAGTTTCCGATCACGTACCCTTCTGGAAGGTCTATGGATATATAATAATATCAGATTCACTCTTGTGAAATTTAGTTCAAGCCACTGGCTTGATATAAGGTTGGAAACACTAGGAGGTATCATGATTTGGGTGATAGCAACCTTTGGTGTCATGCAGAATGGAAAAGCAGAAAACCAAGTACAATTTGCATCGACAGTGGGTCTACTTCTCACTTATACTTTGAATATTACAAATCTGTTGAGTGATGTGCTATTGTGCTTAGGCAAGCAAGCAAGGCTGAAAATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

289

Amino Acids

33.11

Weight (kDa)

8.9

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	647
AfaI	GTAC	6 cut(s)	27, 159, 194, 577, 595, 759
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	274, 367, 657, 802
AhdI	GACNNNNNGTC	1 cut(s)	777
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	329
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	3 cut(s)	75, 126, 560
AluI	AGCT	3 cut(s)	75, 126, 560
Alw21I	GWGCWC	2 cut(s)	389, 458
AoxI	GGCC	2 cut(s)	211, 402
ApeKI	GCWGC	2 cut(s)	277, 434
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	3 cut(s)	53, 112, 721
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	389, 458
BbvI	GCAGC	2 cut(s)	289, 446
BciT130I	CCWGG	1 cut(s)	331
BclI	TGATCA	1 cut(s)	58
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	72
BglII	AGATCT	2 cut(s)	152, 494
BisI	GCNGC	2 cut(s)	278, 435
BlsI	GCNGC	2 cut(s)	279, 436
Bme1390I	CCNGG	1 cut(s)	331
BmeRI	GACNNNNNGTC	1 cut(s)	777
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	109, 776
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	838
BsaAI	YACGTR	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	153, 458
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	289, 446
BshFI	GGCC	2 cut(s)	213, 404
BsiHKAI	GWGCWC	2 cut(s)	389, 458
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	2 cut(s)	213, 404
Bsp1286I	GDGCHC	2 cut(s)	389, 458
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
BspANI	GGCC	2 cut(s)	213, 404
BspHI	TCATGA	1 cut(s)	699
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	668
BssMI	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	187, 250, 775
BstAUI	TGTACA	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	124, 845, 849
BstDEI	CTNAG	1 cut(s)	838
BstF5I	GGATG	2 cut(s)	153, 458
BstKTI	GATC	6 cut(s)	61, 155, 305, 497, 568, 590
BstMBI	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 557, 853
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	2 cut(s)	32, 203
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	289, 446
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	152, 494
BstYI	RGATCY	2 cut(s)	152, 494
BsuRI	GGCC	2 cut(s)	213, 404
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	153, 458
BtsIMutI	CAGTG	3 cut(s)	192, 661, 780
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	124, 845, 849
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	6 cut(s)	26, 158, 193, 576, 594, 758
CviAII	CATG	8 cut(s)	29, 83, 200, 226, 283, 431, 700, 730
CviJI	RGCY	9 cut(s)	75, 126, 213, 404, 437, 560, 660, 667, 856
CviKI_1	RGCY	9 cut(s)	75, 126, 213, 404, 437, 560, 660, 667, 856
CviQI	GTAC	6 cut(s)	26, 158, 193, 576, 594, 758
DdeI	CTNAG	1 cut(s)	838
DpnI	GATC	6 cut(s)	60, 154, 304, 496, 567, 589
DpnII	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
DriI	GACNNNNNGTC	1 cut(s)	777
Eam1105I	GACNNNNNGTC	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	8 cut(s)	32, 86, 203, 229, 286, 434, 703, 733
FatI	CATG	8 cut(s)	28, 82, 199, 225, 282, 430, 699, 729
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	278, 435
FokI	GGATG	2 cut(s)	160, 445
Fsp4HI	GCNGC	2 cut(s)	278, 435
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	2 cut(s)	278, 435
HaeIII	GGCC	2 cut(s)	213, 404
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	8 cut(s)	32, 86, 203, 229, 286, 434, 703, 733
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	3 cut(s)	334, 482, 633
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	53, 112, 721
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	5 cut(s)	267, 453, 570, 587, 632
Hpy188III	TCNNGA	2 cut(s)	602, 700
Hpy8I	GTNNAC	1 cut(s)	782
HpyAV	CCTTC	2 cut(s)	599, 608
HpyCH4III	ACNGT	3 cut(s)	187, 250, 775
HpyCH4IV	ACGT	2 cut(s)	312, 592
HpyCH4V	TGCA	9 cut(s)	67, 122, 203, 327, 354, 434, 509, 733, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 557, 853
HpyF3I	CTNAG	1 cut(s)	838
HpySE526I	ACGT	2 cut(s)	312, 592
Hsp92II	CATG	8 cut(s)	32, 86, 203, 229, 286, 434, 703, 733
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
Lsp1109I	GCAGC	2 cut(s)	289, 446
LweI	GCATC	2 cut(s)	109, 776
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	2 cut(s)	312, 592
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	6 cut(s)	60, 154, 304, 496, 567, 589
MboI	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
MboII	GAAGA	4 cut(s)	47, 56, 128, 254
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	152, 494
MhlI	GDGCHC	2 cut(s)	389, 458
MluCI	AATT	6 cut(s)	367, 420, 512, 543, 647, 761
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	3 cut(s)	166, 203, 686
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	4 cut(s)	165, 288, 527, 868
MslI	CAYNNNNRTG	1 cut(s)	641
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	384, 557, 853
NdeII	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
NlaIII	CATG	8 cut(s)	32, 86, 203, 229, 286, 434, 703, 733
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	2 cut(s)	32, 203
OliI	CACNNNNGTG	1 cut(s)	641
PagI	TCATGA	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	213
PciI	ACATGT	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	334, 482, 633
PkrI	GCNGC	2 cut(s)	279, 436
Ppu21I	YACGTR	1 cut(s)	593
PscI	ACATGT	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	402
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	152, 494
RsaI	GTAC	6 cut(s)	27, 159, 194, 577, 595, 759
RsaNI	GTAC	6 cut(s)	26, 158, 193, 576, 594, 758
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	4 cut(s)	165, 288, 527, 868
SatI	GCNGC	2 cut(s)	278, 435
Sau3AI	GATC	6 cut(s)	58, 152, 302, 494, 565, 587
Sau96I	GGNCC	1 cut(s)	402
SbfI	CCTGCAGG	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	331
SdaI	CCTGCAGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	389, 458
SfaNI	GCATC	2 cut(s)	109, 776
SfcI	CTRYAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse8387I	CCTGCAGG	1 cut(s)	69
Sse9I	AATT	6 cut(s)	367, 420, 512, 543, 647, 761
SseBI	AGGCCT	1 cut(s)	213
SspI	AATATT	2 cut(s)	359, 805
SspMI	CTAG	1 cut(s)	689
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	187, 250, 775
TaiI	ACGT	2 cut(s)	315, 595
TaqI	TCGA	1 cut(s)	770
TasI	AATT	6 cut(s)	367, 420, 512, 543, 647, 761
TatI	WGTACW	4 cut(s)	25, 157, 192, 757
TfiI	GAWTC	3 cut(s)	334, 482, 633
Tru1I	TTAA	4 cut(s)	165, 288, 527, 868
Tru9I	TTAA	4 cut(s)	165, 288, 527, 868
TscAI	CASTG	3 cut(s)	192, 668, 780
TseI	GCWGC	2 cut(s)	277, 434
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	3 cut(s)	192, 668, 780
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	2 cut(s)	32, 203
XmiI	GTMKAC	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.