Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

26547242 .. 26547991

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATGATCTTTCATCTTCCCTCTCCTTCAACTGCTCAGAGGTATCGTGTGGAGAATTTGTATGAGGGCCCCCTTGATGACCAATATGCCAATGCCATTAGGAACTGTGATCCTGAAGGACCTCTTATGCTGTATGTGTCTAAGATGATTCCTGCCTCTGACAAGGGTAGATTCTTTGCTTTTGGTCGTGTGTTTGCTGGGAAAGTCCATACAGGTGTGAAGGTTAGAATTATGGGTCCAAATTATATTCCTGGAGAAAAGAAGATTTGTATGTTAAGAATGTACGTACAGAGAACTGTAATCTGGATGGGAAAGAAACAAGAAACTGTTGAGGACGTTCCTTGTGGTAACACTGTTGCCTTGGTTGGTCTGGATCAGTTTATCACCAAGAATGCTACATTAACAAATGAAAAGGAAACCGATGCCCACCCCATTCGTGCTATGAAGTTCTCTGTCTCACCCGTTGCTGTTCAATGCAAGGTTGCTTCTGACCTTCCCAAACTTGTTGAAGGTCTCAAACGTCTGGCAAAGTCTGATCCTATGGTTGTCTGTTCCATTGAGGAGTCTGGGGAGCACATTATTGCAGGTGCTGGTGAACTTCACCTTGAAATCTGTCTGAAGGATCTTCAGGATGATTTTATGGGTGGAGCAGAAATTATAAAATCTGATCCTGTTGTGTCCTTCCGTGAGACGGTCCTCGAGAAGTCTAGCCGTACGTACAGTGATGAGCAAGTCACCCAACAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

249

Amino Acids

27.69

Weight (kDa)

6.24

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-G_D2	PF22042	45 - 136	3.3e-07	Elongation factor G domain 2
GTP_EFTU_D2	PF03144	60 - 129	2e-09	Elongation factor Tu domain 2
EFG_III	PF14492	152 - 213	4.6e-11	Elongation Factor G, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AarI	CACCTGC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	575
AclWI	GGATC	5 cut(s)	104, 381, 530, 630, 662
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	3 cut(s)	135, 611, 638
AfaI	GTAC	4 cut(s)	284, 288, 715, 719
AfiI	CCNNNNNNNGG	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	30, 473, 509, 608
AjnI	CCWGG	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	3 cut(s)	460, 518, 683
AlwI	GGATC	5 cut(s)	104, 381, 530, 630, 662
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	67
ApaI	GGGCCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	55
AspS9I	GGNCC	5 cut(s)	67, 68, 119, 236, 694
AsuHPI	GGTGA	5 cut(s)	376, 450, 593, 605, 727
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	3 cut(s)	119, 236, 694
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	576
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	3 cut(s)	460, 518, 683
BfaI	CTAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	575
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	3 cut(s)	119, 236, 694
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	5 cut(s)	67, 68, 119, 236, 694
BmiI	GGNNCC	3 cut(s)	69, 70, 237
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	273
BsaAI	YACGTR	2 cut(s)	286, 717
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	2 cut(s)	312, 637
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	698
BsiWI	CGTACG	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	3 cut(s)	460, 518, 683
BsmBI	CGTCTC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	698
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 576
Bsp143I	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	69, 70, 237
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	5 cut(s)	104, 381, 530, 630, 662
BspTNI	GGTCTC	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	6 cut(s)	107, 298, 328, 355, 694, 722
BstBAI	YACGTR	2 cut(s)	286, 717
BstDEI	CTNAG	2 cut(s)	36, 141
BstF5I	GGATG	2 cut(s)	312, 637
BstKTI	GATC	6 cut(s)	9, 112, 376, 538, 625, 670
BstMAI	GTCTC	3 cut(s)	460, 518, 683
BstMBI	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	71
BstSNI	TACGTA	2 cut(s)	286, 717
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	312, 637
BtsIMutI	CAGTG	2 cut(s)	351, 727
BveI	ACCTGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr13I	GGNCC	5 cut(s)	67, 68, 119, 236, 694
Csp6I	GTAC	4 cut(s)	283, 287, 714, 718
CviJI	RGCY	2 cut(s)	69, 711
CviKI_1	RGCY	2 cut(s)	69, 711
CviQI	GTAC	4 cut(s)	283, 287, 714, 718
DdeI	CTNAG	2 cut(s)	36, 141
DpnI	GATC	6 cut(s)	8, 111, 375, 537, 624, 669
DpnII	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
Eco105I	TACGTA	2 cut(s)	286, 717
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	3 cut(s)	119, 236, 694
Eco57I	CTGAAG	3 cut(s)	135, 611, 638
Eco88I	CYCGRG	1 cut(s)	698
EcoO109I	RGGNCCY	3 cut(s)	67, 68, 119
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	683
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FokI	GGATG	2 cut(s)	319, 644
FriOI	GRGCYC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	708
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	148, 171, 563
HphI	GGTGA	5 cut(s)	376, 450, 593, 605, 727
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	6 cut(s)	39, 160, 490, 535, 618, 667
Hpy188III	TCNNGA	5 cut(s)	113, 304, 371, 629, 700
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	7 cut(s)	36, 110, 214, 503, 503, 613, 691
HpyCH4III	ACNGT	6 cut(s)	107, 298, 328, 355, 694, 722
HpyCH4IV	ACGT	4 cut(s)	285, 336, 520, 716
HpyCH4V	TGCA	2 cut(s)	477, 584
HpyF3I	CTNAG	2 cut(s)	36, 141
HpySE526I	ACGT	4 cut(s)	285, 336, 520, 716
Kzo9I	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
LmnI	GCTCC	2 cut(s)	571, 647
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	4 cut(s)	285, 336, 520, 716
MaeIII	GTNAC	2 cut(s)	347, 733
MalI	GATC	6 cut(s)	8, 111, 375, 537, 624, 669
MboI	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
MboII	GAAGA	3 cut(s)	8, 274, 617
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	71, 576
MluCI	AATT	4 cut(s)	55, 228, 241, 654
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	31, 33, 58, 132, 166, 325, 553, 707
MseI	TTAA	2 cut(s)	275, 401
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
NlaIV	GGNNCC	3 cut(s)	69, 70, 237
NmuCI	GTSAC	1 cut(s)	733
PaeR7I	CTCGAG	1 cut(s)	698
PaqCI	CACCTGC	1 cut(s)	575
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	148, 171
Pfl23II	CGTACG	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	250
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Ppu21I	YACGTR	2 cut(s)	286, 717
PpuMI	RGGWCCY	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	250
PspLI	CGTACG	1 cut(s)	713
PspN4I	GGNNCC	3 cut(s)	69, 70, 237
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	5 cut(s)	67, 68, 119, 236, 694
PspPPI	RGGWCCY	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	4 cut(s)	284, 288, 715, 719
RsaNI	GTAC	4 cut(s)	283, 287, 714, 718
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	275, 401
Sau3AI	GATC	6 cut(s)	6, 109, 373, 535, 622, 667
Sau96I	GGNCC	5 cut(s)	67, 68, 119, 236, 694
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	71, 576
SfaNI	GCATC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	3 cut(s)	119, 236, 694
SlaI	CTCGAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SnaBI	TACGTA	2 cut(s)	286, 717
Sse9I	AATT	4 cut(s)	55, 228, 241, 654
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	6 cut(s)	107, 298, 328, 355, 694, 722
TaiI	ACGT	4 cut(s)	288, 339, 523, 719
TaqI	TCGA	1 cut(s)	699
TasI	AATT	4 cut(s)	55, 228, 241, 654
TfiI	GAWTC	2 cut(s)	148, 171
Tru1I	TTAA	2 cut(s)	275, 401
Tru9I	TTAA	2 cut(s)	275, 401
TscAI	CASTG	2 cut(s)	358, 727
TseFI	GTSAC	1 cut(s)	733
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	2 cut(s)	423, 458
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	358, 727
VpaK11BI	GGWCC	3 cut(s)	119, 236, 694
XapI	RAATTY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	698
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.