Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

52443735 .. 52452471

Gene Structure 8737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAAGGGAGGACATATTTCTTGGATTTGTTCGGTGGTGGTTCTCTCAGTCGGTTCCGTTGGGTCAATGTGTGTTGGTAAGGTGGTCACCCTATGTGCTATGGCGACGCCGACGACGACTTCAATGGTTGCCGGTGACGATTTCGATGGCTTTTTGGGTCGTGGTGCTGCCTTGTTCGCTCGTCGCCAAGGTTACGAGCCAGCCTTGAATCCTAAATTTGTGAAACGTGGGATGCCGAAAGAGAAGAGCGGGATTTCTTGTTTCCGTAAAAGATTGCAGTGCGGGATGAGAGCGCGGCAAATTTTTGCCCAAAGGCTCTCTATATATTCATCGATTCATTGTTCTCTCGAAAATCCATATCTAGTCGCGTTCATCTTCTTCGGAAGCGAGCTTCGTTTGAACTTTATTGCTCTTGACCGACATAATAGCAACAATTTCTCTCCGAACAGACCCAGAAACATTTACAATACAGATAATGAAGGAAAGAGCGCTAATATTAACGCAGAGGCAATTGCAACTGATTTGGCATACTTGTATGGCCACTACCCCAAGCTCAATGATACCAATGTCTTTCGTGTTCTAGCTGCTGCTCTTTTCTTGATCTTCGGGTATCACATTCTTGTTATGAGTGTGCTTCACGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

216

Amino Acids

23.88

Weight (kDa)

9.32

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	2 cut(s)	298, 371
AciI	CCGC	3 cut(s)	252, 285, 298
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	2 cut(s)	218, 303
AcyI	GRCGYC	1 cut(s)	110
AfeI	AGCGCT	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	126, 211, 403
AluBI	AGCT	3 cut(s)	394, 556, 587
AluI	AGCT	3 cut(s)	394, 556, 587
Aor51HI	AGCGCT	1 cut(s)	493
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	170, 587, 590
ApoI	RAATTY	2 cut(s)	218, 303
AspLEI	GCGC	2 cut(s)	298, 494
AsuHPI	GGTGA	2 cut(s)	82, 149
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BalI	TGGCCA	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	157, 574, 577
BccI	CCATC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	365, 584
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	4 cut(s)	171, 299, 588, 591
BlsI	GCNGC	4 cut(s)	172, 300, 589, 592
BmiI	GGNNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	240, 294
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	157, 574, 577
Bsh1236I	CGCG	2 cut(s)	298, 371
BshFI	GGCC	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	603
BspACI	CCGC	3 cut(s)	252, 285, 298
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	335
BspFNI	CGCG	2 cut(s)	298, 371
BspLI	GGNNCC	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	603
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	204, 392
BstDEI	CTNAG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	240, 294
BstFNI	CGCG	2 cut(s)	298, 371
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	2 cut(s)	298, 494
BstKTI	GATC	1 cut(s)	606
BstMBI	GATC	1 cut(s)	603
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	88
BstUI	CGCG	2 cut(s)	298, 371
BstV1I	GCAGC	3 cut(s)	157, 574, 577
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	543
BsuTUI	ATCGAT	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	240, 294
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	204, 392
CfoI	GCGC	2 cut(s)	298, 494
Cfr10I	RCCGGY	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	118
CviJI	RGCY	8 cut(s)	153, 202, 206, 319, 394, 543, 556, 587
CviKI_1	RGCY	8 cut(s)	153, 202, 206, 319, 394, 543, 556, 587
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	1 cut(s)	605
DpnII	GATC	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	190
Eco47III	AGCGCT	1 cut(s)	493
Eco91I	GGTNACC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FauI	CCCGC	2 cut(s)	245, 278
Fnu4HI	GCNGC	4 cut(s)	171, 299, 588, 591
FokI	GGATG	2 cut(s)	247, 301
Fsp4HI	GCNGC	4 cut(s)	171, 299, 588, 591
FspBI	CTAG	2 cut(s)	365, 584
GlaI	GCGC	2 cut(s)	297, 493
GluI	GCNGC	4 cut(s)	171, 299, 588, 591
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	298, 494
Hin1I	GRCGYC	1 cut(s)	110
Hin6I	GCGC	2 cut(s)	296, 492
HinP1I	GCGC	2 cut(s)	296, 492
HinfI	GANTC	2 cut(s)	211, 337
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	82, 149
Hpy188I	TCNGA	2 cut(s)	386, 447
Hpy188III	TCNNGA	4 cut(s)	350, 416, 601, 641
Hpy99I	CGWCG	4 cut(s)	112, 118, 121, 189
HpyAV	CCTTC	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	280, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	110
HspAI	GCGC	2 cut(s)	296, 492
Kzo9I	GATC	1 cut(s)	603
LguI	GCTCTTC	1 cut(s)	242
LpnPI	CCDG	3 cut(s)	148, 216, 469
Lsp1109I	GCAGC	3 cut(s)	157, 574, 577
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	365, 584
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	3 cut(s)	88, 137, 194
MalI	GATC	1 cut(s)	605
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	1 cut(s)	603
MboII	GAAGA	4 cut(s)	259, 370, 373, 598
MfeI	CAATTG	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	4 cut(s)	218, 303, 436, 513
MluNI	TGGCCA	1 cut(s)	543
MnlI	CCTC	2 cut(s)	5, 502
Mox20I	TGGCCA	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	513
MvnI	CGCG	2 cut(s)	298, 371
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	603
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	88, 137
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	211, 337
PkrI	GCNGC	4 cut(s)	172, 300, 589, 592
PspEI	GGTNACC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	4 cut(s)	171, 299, 588, 591
Sau3AI	GATC	1 cut(s)	603
SetI	ASST	6 cut(s)	87, 196, 232, 396, 558, 589
SfaNI	GCATC	1 cut(s)	225
Sse9I	AATT	4 cut(s)	218, 303, 436, 513
SsiI	CCGC	3 cut(s)	252, 285, 298
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	365, 584
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	147, 335, 351
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	218, 303, 436, 513
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	211, 337
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	2 cut(s)	88, 137
TseI	GCWGC	3 cut(s)	170, 587, 590
Tsp45I	GTSAC	2 cut(s)	88, 137
TspDTI	ATGAA	4 cut(s)	321, 329, 364, 495
TspGWI	ACGGA	2 cut(s)	49, 257
TspRI	CASTG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	218, 303
XspI	CTAG	2 cut(s)	365, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.