Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

45363698 .. 45365052

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG405600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTAGATTTGCGTTCAGAGGCTCCTGCTGTCATTGAGAGCAACCAACCCCCTCCTGCATGGCCTTCATCTGGATCAATAAAATTTGAGGATGCTTTGTTACGTTATAGGCCTGAGCTTCCTCCAGTTTTGCATGAGTTGTCTTTCACAGTTTCTCCAGGTGAGAAGGTTGGAGTTGTTGGAAGGATTGGGGCAGGGAAATCCAGCATGCTGACTGCTTTGTTTCGAATTGTTGAATTAGAAAGAGGAAGAATCTTGATTGACAATTGTGATATTGCTAAGTTTGGACTGACAGATCTAAGGAAAGTTCTTGGTATTATAGCTCAGTCACCGGTTCTGTTTTCAGGAACTGTGAGATTTAATCTCGATCCTTTTCATGAGCATAATGATGCTGACCTCTGGGAAGCTTTAGAGAGAGCACATTTAAAGGACACCGCCATCAGGAGGAATTCTTTGGGGTTAGATGCTGAGGTCTCGGAGACAGGAGAGAATTTTAGTGTTGGACAGAGGCAATTAGTAAGTCTTGCTCGAGCGCTGTTGCGGAGAACAAAAGTTATTGTTCTGGATGAAGCAACTGCAGCTGTTGATGTCAGAACTGATGCTCTTATTCAAAAGGCTATTGGTGAAGAGTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

212

Amino Acids

23.23

Weight (kDa)

5.47

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	44 - 193	7.3e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	435, 541
AclWI	GGATC	2 cut(s)	82, 362
AcsI	RAATTY	3 cut(s)	83, 448, 490
AfeI	AGCGCT	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	71, 441, 444
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	236, 611
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	118, 323, 407, 581
AluI	AGCT	4 cut(s)	118, 323, 407, 581
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	473, 478
AlwI	GGATC	2 cut(s)	82, 362
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	528
Aor51HI	AGCGCT	1 cut(s)	534
AoxI	GGCC	2 cut(s)	62, 110
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	3 cut(s)	83, 448, 490
AsiGI	ACCGGT	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	535
AsuHPI	GGTGA	3 cut(s)	173, 321, 635
AsuII	TTCGAA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	473, 478
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	536
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	4 cut(s)	82, 379, 454, 589
BpmI	CTGGAG	2 cut(s)	108, 141
Bpu10I	CCTNAGC	2 cut(s)	114, 468
Bpu14I	TTCGAA	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 441, 444
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	97, 571
BseLI	CCNNNNNNNGG	3 cut(s)	71, 441, 444
BseMII	CTCAG	3 cut(s)	105, 338, 459
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	590
BshFI	GGCC	2 cut(s)	64, 112
BshTI	ACCGGT	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	3 cut(s)	71, 441, 444
BsmAI	GTCTC	2 cut(s)	473, 478
BsnI	GGCC	2 cut(s)	64, 112
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	528
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	74, 295, 367
BspACI	CCGC	2 cut(s)	435, 541
BspANI	GGCC	2 cut(s)	64, 112
BspCNI	CTCAG	3 cut(s)	106, 337, 460
BspHI	TCATGA	2 cut(s)	376, 635
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	82, 362
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	331
BssMI	GATC	3 cut(s)	74, 295, 367
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	151, 352
Bst6I	CTCTTC	1 cut(s)	621
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	5 cut(s)	114, 279, 299, 324, 468
BstF5I	GGATG	2 cut(s)	97, 571
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	3 cut(s)	77, 298, 370
BstMAI	GTCTC	2 cut(s)	473, 478
BstMBI	GATC	3 cut(s)	74, 295, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	64, 112
BtsCI	GGATG	2 cut(s)	97, 571
Cac8I	GCNNGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	2 cut(s)	376, 635
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	5 cut(s)	60, 134, 208, 377, 636
CviJI	RGCY	8 cut(s)	23, 64, 112, 118, 323, 407, 581, 617
CviKI_1	RGCY	8 cut(s)	23, 64, 112, 118, 323, 407, 581, 617
DdeI	CTNAG	5 cut(s)	114, 279, 299, 324, 468
DpnI	GATC	3 cut(s)	76, 297, 369
DpnII	GATC	3 cut(s)	74, 295, 367
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco147I	AGGCCT	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	5 cut(s)	63, 137, 211, 380, 639
FaiI	YATR	8 cut(s)	61, 108, 135, 209, 320, 378, 384, 637
FatI	CATG	5 cut(s)	59, 133, 207, 376, 635
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	2 cut(s)	104, 578
Fsp4HI	GCNGC	1 cut(s)	579
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	579
GsuI	CTGGAG	2 cut(s)	108, 141
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	64, 112
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	63, 137, 211, 380, 639
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	3 cut(s)	173, 321, 635
Hpy188I	TCNGA	3 cut(s)	19, 478, 593
Hpy188III	TCNNGA	8 cut(s)	72, 256, 345, 365, 377, 442, 563, 636
HpyAV	CCTTC	3 cut(s)	75, 160, 177
HpyCH4III	ACNGT	2 cut(s)	151, 352
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	3 cut(s)	59, 133, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	5 cut(s)	114, 279, 299, 324, 468
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	63, 137, 211, 380, 639
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	74, 295, 367
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	4 cut(s)	82, 379, 454, 589
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	99, 327
MalI	GATC	3 cut(s)	76, 297, 369
MboI	GATC	3 cut(s)	74, 295, 367
MboII	GAAGA	2 cut(s)	261, 638
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	7 cut(s)	83, 228, 236, 265, 448, 490, 512
MmeI	TCCRAC	3 cut(s)	151, 160, 481
MnlI	CCTC	9 cut(s)	13, 63, 82, 132, 239, 407, 438, 463, 501
MseI	TTAA	2 cut(s)	360, 425
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	3 cut(s)	74, 295, 367
NlaIII	CATG	5 cut(s)	63, 137, 211, 380, 639
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	327
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	528
PagI	TCATGA	2 cut(s)	376, 635
PceI	AGGCCT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	252
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	528
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	360, 425
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	3 cut(s)	74, 295, 367
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	9 cut(s)	106, 120, 163, 171, 325, 399, 409, 474, 583
SfaNI	GCATC	4 cut(s)	82, 379, 454, 589
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	7 cut(s)	83, 228, 236, 265, 448, 490, 512
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	435, 541
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	151, 352
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	3 cut(s)	226, 366, 529
TasI	AATT	7 cut(s)	83, 228, 236, 265, 448, 490, 512
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	360, 425
Tru9I	TTAA	2 cut(s)	360, 425
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	4 cut(s)	57, 365, 582, 624
XapI	RAATTY	3 cut(s)	83, 448, 490
XceI	RCATGY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.