Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Reverse (-)

45362861 .. 45363645

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTCCAAAGTACAGGATCTGCAAATGCTCAATATTTACGAAGCTTGGTAGGGGAAGGTAAAAACAAGTTTGGGAGAGAAGATCAGAACAAACAACTCTATGGACAGAGGAGATGGGCGGCCTCTTCCTCTTCTCCCTGGGCTGCAGCTACCCAGCTTGCCTTAACTATTAGCCTGACTTCTTCACAGAAGGATCTTCAACTGTTGGAAATTGAAGATGAGAACAATATCCTCAGGAAGACCAACGATGCAGTGATAACTCTCCAAGGAGTTCTGGAAGGGAAGCATGATAAAGTTATTGAGGAATCTCTTGAGCAATACCAGATCTCAAGAGATGGGTGGTGGTCAGCTCTATACAGAATTGTTGAAGGTCTTGCTGTGATGAGCAGGTTGGTCAGGAACAGGGTTCAGCAATCAGAATATGGTTTTGAAGACGGATCAATTGATTGGGACCATGCTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

5.07

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	25, 201, 445
AfaI	GTAC	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	4 cut(s)	200, 215, 368, 431
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	45, 149, 157, 350
AluI	AGCT	4 cut(s)	45, 149, 157, 350
AlwI	GGATC	3 cut(s)	25, 201, 445
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	143, 146
AspS9I	GGNCC	2 cut(s)	4, 451
AvaII	GGWCC	2 cut(s)	4, 451
AxyI	CCTNAGG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	245, 438
BbvI	GCAGC	2 cut(s)	130, 158
BccI	CCATC	2 cut(s)	108, 329
BciT130I	CCWGG	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	378
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	120, 144, 147
BlsI	GCNGC	3 cut(s)	121, 145, 148
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	4, 451
BmgT120I	GGNCC	2 cut(s)	4, 451
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	245, 438
BpuEI	CTTGAG	2 cut(s)	313, 332
BsaJI	CCNNGG	3 cut(s)	137, 138, 265
Bse21I	CCTNAGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	137, 138, 265
BseMII	CTCAG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	130, 158
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	17, 82, 193, 324, 437
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	25, 201, 445
BssECI	CCNNGG	3 cut(s)	137, 138, 265
BssMI	GATC	5 cut(s)	17, 82, 193, 324, 437
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	130, 136
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	233
BstKTI	GATC	5 cut(s)	20, 85, 196, 327, 440
BstMBI	GATC	5 cut(s)	17, 82, 193, 324, 437
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	130, 158
BstV2I	GAAGAC	2 cut(s)	245, 438
BstX2I	RGATCY	3 cut(s)	17, 193, 324
BstYI	RGATCY	3 cut(s)	17, 193, 324
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	4, 451
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	3 cut(s)	287, 455, 463
CviJI	RGCY	7 cut(s)	45, 122, 143, 149, 157, 174, 350
CviKI_1	RGCY	7 cut(s)	45, 122, 143, 149, 157, 174, 350
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	5 cut(s)	19, 84, 195, 326, 439
DpnII	GATC	5 cut(s)	17, 82, 193, 324, 437
Eam1104I	CTCTTC	2 cut(s)	130, 136
EarI	CTCTTC	2 cut(s)	130, 136
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	4, 451
Eco81I	CCTNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	290, 458, 466
FaiI	YATR	6 cut(s)	102, 288, 355, 423, 456, 464
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	286, 454, 462
Fnu4HI	GCNGC	3 cut(s)	120, 144, 147
Fsp4HI	GCNGC	3 cut(s)	120, 144, 147
GluI	GCNGC	3 cut(s)	120, 144, 147
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	290, 458, 466
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	87, 418
Hpy188III	TCNNGA	5 cut(s)	235, 275, 311, 330, 397
HpyAV	CCTTC	4 cut(s)	50, 184, 272, 362
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	23, 146, 251
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	290, 458, 466
Kzo9I	GATC	5 cut(s)	17, 82, 193, 324, 437
Lsp1109I	GCAGC	2 cut(s)	130, 158
LweI	GCATC	1 cut(s)	238
MalI	GATC	5 cut(s)	19, 84, 195, 326, 439
MboI	GATC	5 cut(s)	17, 82, 193, 324, 437
MboII	GAAGA	8 cut(s)	92, 117, 123, 174, 188, 227, 250, 443
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	3 cut(s)	17, 193, 324
MluCI	AATT	3 cut(s)	210, 360, 441
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	102, 133, 139, 242, 295
MseI	TTAA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	139
NdeII	GATC	5 cut(s)	17, 82, 193, 324, 437
NlaIII	CATG	3 cut(s)	290, 458, 466
NlaIV	GGNNCC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	121, 145, 148
PscI	ACATGT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	4, 451
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	3 cut(s)	17, 193, 324
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	120, 144, 147
Sau3AI	GATC	5 cut(s)	17, 82, 193, 324, 437
Sau96I	GGNCC	2 cut(s)	4, 451
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	7 cut(s)	47, 61, 151, 159, 352, 373, 392
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	4, 451
SmlI	CTYRAG	2 cut(s)	311, 328
SmoI	CTYRAG	2 cut(s)	311, 328
Sse9I	AATT	3 cut(s)	210, 360, 441
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	204
TasI	AATT	3 cut(s)	210, 360, 441
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	143, 146
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	4, 451
XceI	RCATGY	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.