Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005937

Physical Location & Seq

Genomic Coordinates Forward (+)

10774485 .. 10775469

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG119100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTTGGGTGATAGCAACCTTTGCTGTCTTGCAAAATGGAAGAGCAGAAAACCAAGTACAATTTGCATCTACAATGGGTCTACTTCTCACTTATACTTTTAATATCACAAGTCTGTCGAGTGATGTTCTGAGACAAGCAAGCAGGGCTGAAAATAGTTTAAATGCTGTTGAGCGGGTTGGAAGATATATAGATTTGCCTTCTGAGGCTCCAGCTGTTATTGAAAGCAACGGTCCCCCACATGGGTGGCCATCAACAGGATCAATCAAGTTTGAGGATGTTGTCCTCTGTTATAGGCCTGGACTCCCACCAGTGCTGCACGGATTATCATTTACAGTTTCTGCAATTCTTAGCATCATACCACAATCACCGGTTCTTTTCTCAGGAACTGTGCGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTTTGGGAAGCCTTAGAAAGGGCACATCTAAAGGATGTCATTAGGAGGAATTCATTCTGTCTCGATGCTGAGGTTTCCGAGGGCGGTGAAAATTTCAGTGTTGGACAGAGGCAGCTAATAATTGCTACGGAGATCAAAGATTCTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

195

Amino Acids

21.39

Weight (kDa)

4.93

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097901 RchiOBHm_Chr3g0492001
rosa_laevigata	RLG00000026535 RLG00000032203
rosa_multiflora	Rmu_co8080046.1_g000001 Rmu_sc0001501.1_g000097 Rmu_sc0005017.1_g000007 Rmu_sc0033460.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035940 Rroxscaffold_3G00254760 Rroxscaffold_6G00392650
rosa_rugosa	Rorug07G0277500 Rorug07G0277700
rosa_samantha	Rh3AG301300 Rh3AG301400 Rh3BG337300 Rh3CG334500 Rh3CG334600 Rh3CG334700 Rh3DG336800 Rh5AG121500 Rh5BG119900 Rh5DG119100 Rh5DG242800 Rh7AG432700 Rh7BG405500 Rh7BG405600 Rh7CG452000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	82
AciI	CCGC	3 cut(s)	175, 394, 519
AclWI	GGATC	2 cut(s)	268, 401
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	484, 526
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	4 cut(s)	242, 243, 257, 453
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	215, 550
AluI	AGCT	2 cut(s)	215, 550
Alw26I	GTCTC	2 cut(s)	127, 500
AlwI	GGATC	2 cut(s)	268, 401
AlwNI	CAGNNNCTG	2 cut(s)	341, 389
AoxI	GGCC	2 cut(s)	248, 296
ApeKI	GCWGC	2 cut(s)	316, 547
ApoI	RAATTY	2 cut(s)	484, 526
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	22, 360, 533
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	303, 559
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	127, 500
BisI	GCNGC	2 cut(s)	317, 548
BlsI	GCNGC	2 cut(s)	318, 549
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	210, 235
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	4 cut(s)	77, 363, 418, 490
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 243, 257, 453
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	283, 475
BseLI	CCNNNNNNNGG	4 cut(s)	242, 243, 257, 453
BseMII	CTCAG	4 cut(s)	122, 195, 396, 495
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	303, 559
BsgI	GTGCAG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	250, 298
BshTI	ACCGGT	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	4 cut(s)	242, 243, 257, 453
BsmAI	GTCTC	2 cut(s)	127, 500
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	250, 298
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	260, 406, 567
BspACI	CCGC	3 cut(s)	175, 394, 519
BspANI	GGCC	2 cut(s)	250, 298
BspCNI	CTCAG	4 cut(s)	123, 196, 395, 496
BspLI	GGNNCC	2 cut(s)	210, 235
BspPI	GGATC	2 cut(s)	268, 401
BspQI	GCTCTTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	260, 406, 567
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	233, 337, 391
Bst6I	CTCTTC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	6 cut(s)	131, 204, 350, 382, 448, 504
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	283, 475
BstKTI	GATC	3 cut(s)	263, 409, 570
BstMAI	GTCTC	2 cut(s)	127, 500
BstMBI	GATC	3 cut(s)	260, 406, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 146
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	303, 559
BstXI	CCANNNNNNTGG	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	250, 298
BtsCI	GGATG	2 cut(s)	283, 475
BtsIMutI	CAGTG	3 cut(s)	318, 421, 538
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	2 cut(s)	341, 389
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	149, 209, 215, 250, 298, 446, 550
CviKI_1	RGCY	7 cut(s)	149, 209, 215, 250, 298, 446, 550
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	6 cut(s)	131, 204, 350, 382, 448, 504
DpnI	GATC	3 cut(s)	262, 408, 569
DpnII	GATC	3 cut(s)	260, 406, 567
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco147I	AGGCCT	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	245
FaiI	YATR	7 cut(s)	96, 189, 191, 243, 294, 359, 423
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	317, 548
FokI	GGATG	2 cut(s)	290, 482
Fsp4HI	GCNGC	2 cut(s)	317, 548
GluI	GCNGC	2 cut(s)	317, 548
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	250, 298
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	2 cut(s)	303, 575
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	22, 360, 533
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	132, 205, 514
Hpy188III	TCNNGA	4 cut(s)	384, 404, 497, 585
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	3 cut(s)	233, 337, 391
HpyCH4V	TGCA	4 cut(s)	34, 68, 319, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 146
HpyF3I	CTNAG	6 cut(s)	131, 204, 350, 382, 448, 504
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	260, 406, 567
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	130, 225, 243, 285, 312, 324, 369, 384
Lsp1109I	GCAGC	2 cut(s)	303, 559
LweI	GCATC	4 cut(s)	77, 363, 418, 490
MalI	GATC	3 cut(s)	262, 408, 569
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	3 cut(s)	260, 406, 567
MboII	GAAGA	2 cut(s)	54, 195
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	250
MluCI	AATT	5 cut(s)	62, 345, 484, 526, 555
MluNI	TGGCCA	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	160, 517
MnlI	CCTC	7 cut(s)	199, 268, 296, 474, 499, 508, 537
Mox20I	TGGCCA	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	250
MseI	TTAA	3 cut(s)	102, 161, 399
MslI	CAYNNNNRTG	2 cut(s)	244, 426
Msp20I	TGGCCA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	23, 146
NdeII	GATC	3 cut(s)	260, 406, 567
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	210, 235
OliI	CACNNNNGTG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	575
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	318, 549
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	210, 235
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	2 cut(s)	341, 389
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	244, 426
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	102, 161, 399
SatI	GCNGC	2 cut(s)	317, 548
Sau3AI	GATC	3 cut(s)	260, 406, 567
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	5 cut(s)	23, 217, 438, 510, 552
SfaNI	GCATC	4 cut(s)	77, 363, 418, 490
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	244, 426
Sse9I	AATT	5 cut(s)	62, 345, 484, 526, 555
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	3 cut(s)	175, 394, 519
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	233, 337, 391
TaqI	TCGA	2 cut(s)	119, 498
TasI	AATT	5 cut(s)	62, 345, 484, 526, 555
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	3 cut(s)	102, 161, 399
Tru9I	TTAA	3 cut(s)	102, 161, 399
TscAI	CASTG	3 cut(s)	318, 421, 538
TseI	GCWGC	2 cut(s)	316, 547
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	336, 578
TspRI	CASTG	3 cut(s)	318, 421, 538
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	451
XapI	RAATTY	2 cut(s)	484, 526
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.