RchiOBHm_Chr4g0399801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004555
Physical Location & Seq
Reverse (-)
17053846 .. 17054270
425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37191

Sequence Viewer

Length: 258 bp
ATGAAGGCGGCGGTCCCGCGAAGGTGGCTGTGCGGCGCAGCGAGTGGTTTGTCGGAGGTGGTGGGGTTGGGCCGGGTTGAATGGTTTGTTGAGTGGGTTGAGATCAGAGGTCGAAATGGGCCTATACGTGGTGGTAGTTGGGCCTGGGCGTTTGCCAATGCCTTGGGTCTTTTTTGTATTTATTTTTTTTACGTATTTTTATTTTGTATGAATTGTTTTGTGATAATTTATTTTAATAAACTACATTTTATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.8

Weight (kDa)

9.16

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 19
AciI CCGC 4 cut(s) 8, 11, 17, 33
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 143
AoxI GGCC 3 cut(s) 70, 119, 141
ApeKI GCWGC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 13, 70, 119, 141
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 1 cut(s) 74
BisI GCNGC 3 cut(s) 9, 34, 39
BlsI GCNGC 3 cut(s) 10, 35, 40
Bme1390I CCNGG 2 cut(s) 74, 145
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 4 cut(s) 13, 70, 119, 141
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 74, 145
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 2 cut(s) 128, 193
BsaJI CCNNGG 2 cut(s) 144, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 144, 162
BseLI CCNNNNNNNGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 3 cut(s) 72, 121, 143
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 3 cut(s) 72, 121, 143
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 4 cut(s) 8, 11, 17, 33
BspANI GGCC 3 cut(s) 72, 121, 143
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 144, 162
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 145
BstBAI YACGTR 2 cut(s) 128, 193
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 72, 143
BstSNI TACGTA 1 cut(s) 193
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuRI GGCC 3 cut(s) 72, 121, 143
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 4 cut(s) 13, 70, 119, 141
CviJI RGCY 4 cut(s) 28, 72, 121, 143
CviKI_1 RGCY 4 cut(s) 28, 72, 121, 143
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco105I TACGTA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaiI YATR 4 cut(s) 125, 209, 254, 256
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 9, 34, 39
Fsp4HI GCNGC 3 cut(s) 9, 34, 39
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 9, 34, 39
HaeIII GGCC 3 cut(s) 72, 121, 143
HapII CCGG 1 cut(s) 73
HhaI GCGC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 55, 107
HpyAV CCTTC 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 127, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 127, 192
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 86, 130, 157
Lsp1109I GCAGC 1 cut(s) 50
MaeII ACGT 2 cut(s) 127, 192
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MluCI AATT 2 cut(s) 211, 225
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 49, 101
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 74, 145
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 74
NdeII GATC 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 15
PkrI GCNGC 3 cut(s) 10, 35, 40
Ppu21I YACGTR 2 cut(s) 128, 193
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 4 cut(s) 13, 70, 119, 141
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 3 cut(s) 9, 34, 39
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 4 cut(s) 13, 70, 119, 141
ScrFI CCNGG 2 cut(s) 74, 145
SetI ASST 5 cut(s) 26, 60, 112, 130, 195
SgeI CNNG 9 cut(s) 28, 30, 54, 85, 86, 140, 156, 157, 175
SinI GGWCC 1 cut(s) 13
SnaBI TACGTA 1 cut(s) 193
Sse9I AATT 2 cut(s) 211, 225
SsiI CCGC 4 cut(s) 8, 11, 17, 33
StyD4I CCNGG 2 cut(s) 72, 143
StyI CCWWGG 1 cut(s) 162
TaiI ACGT 2 cut(s) 130, 195
TaqI TCGA 1 cut(s) 112
TasI AATT 2 cut(s) 211, 225
TauI GCSGC 2 cut(s) 11, 36
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 17, 224
VpaK11BI GGWCC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.