Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

11207713 .. 11209354

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGACTGCCTGTTGGGGACGAGATCGTGCCGGCGAGGCTTGGATCCGATCAATTTGATCTGGTTTGGGCTGGGTCGCATGAGTCCGATCTGGGGAAGGGATGGGATGGAGCAGCAAGGGATGGGATGGAAATGTTGTCGCTGCTCCATGTCCCAGCAGAATGTTGTGGACTCTGCATGCAATCCCAGCGCTGCCTCACCTTCCCCATCATACTTCGGCGAGCCATTAAAATGTACTCAGATCAAGAGGAGCCTCACATGAAAATGAAGGTGCTTATTGAGGCCAAATTGAGGATGGGGATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

103

Amino Acids

11.45

Weight (kDa)

5.55

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	39, 52
AfaI	GTAC	1 cut(s)	236
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	93, 291
AlwI	GGATC	2 cut(s)	39, 52
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	113, 142, 192
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	125, 129, 179
BccI	CCATC	6 cut(s)	96, 101, 116, 121, 215, 289
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	114, 143, 193
BlsI	GCNGC	3 cut(s)	115, 144, 194
BmiI	GGNNCC	2 cut(s)	46, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 291
Bse118I	RCCGGY	1 cut(s)	31
BseGI	GGATG	5 cut(s)	107, 112, 127, 132, 300
BseLI	CCNNNNNNNGG	2 cut(s)	93, 291
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	125, 129, 179
BseYI	CCCAGC	3 cut(s)	71, 154, 186
BshFI	GGCC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	32, 137
BslI	CCNNNNNNNGG	2 cut(s)	93, 291
BsmFI	GGGAC	2 cut(s)	32, 137
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	46, 252
BspPI	GGATC	2 cut(s)	39, 52
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
BstC8I	GCNNGC	3 cut(s)	33, 179, 222
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	107, 112, 127, 132, 300
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	6 cut(s)	27, 47, 52, 61, 91, 244
BstMBI	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 187
BstNSI	RCATGY	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	125, 129, 179
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	5 cut(s)	107, 112, 127, 132, 300
Cac8I	GCNNGC	3 cut(s)	33, 179, 222
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	80, 149, 178, 259
CviJI	RGCY	5 cut(s)	40, 71, 224, 253, 284
CviKI_1	RGCY	5 cut(s)	40, 71, 224, 253, 284
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	6 cut(s)	26, 46, 51, 60, 90, 243
DpnII	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
Eco47III	AGCGCT	1 cut(s)	191
FaeI	CATG	4 cut(s)	83, 152, 181, 262
FaiI	YATR	5 cut(s)	81, 150, 179, 212, 260
FaqI	GGGAC	2 cut(s)	32, 137
FatI	CATG	4 cut(s)	79, 148, 177, 258
Fnu4HI	GCNGC	3 cut(s)	114, 143, 193
FokI	GGATG	4 cut(s)	114, 119, 134, 139
Fsp4HI	GCNGC	3 cut(s)	114, 143, 193
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	114, 143, 193
GsaI	CCCAGC	3 cut(s)	75, 158, 190
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	83, 152, 181, 262
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	83, 171
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	49, 88, 241
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	91, 211, 262
HpyCH4V	TGCA	2 cut(s)	177, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 187
HpyF3I	CTNAG	1 cut(s)	238
Hsp92II	CATG	4 cut(s)	83, 152, 181, 262
HspAI	GCGC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
LmnI	GCTCC	3 cut(s)	110, 150, 250
LpnPI	CCDG	7 cut(s)	24, 45, 47, 57, 77, 168, 200
Lsp1109I	GCAGC	3 cut(s)	125, 129, 179
MalI	GATC	6 cut(s)	26, 46, 51, 60, 90, 243
MboI	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	2 cut(s)	53, 287
MlyI	GAGTC	2 cut(s)	92, 165
MnlI	CCTC	6 cut(s)	30, 206, 241, 264, 274, 285
MroNI	GCCGGC	1 cut(s)	31
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	230, 263
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	37, 187
NaeI	GCCGGC	1 cut(s)	33
NdeII	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	4 cut(s)	83, 152, 181, 262
NlaIV	GGNNCC	2 cut(s)	46, 252
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	115, 144, 194
PleI	GAGTC	2 cut(s)	91, 165
PpsI	GAGTC	2 cut(s)	91, 165
PspFI	CCCAGC	3 cut(s)	71, 154, 186
PspN4I	GGNNCC	2 cut(s)	46, 252
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	230, 263
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	114, 143, 193
Sau3AI	GATC	6 cut(s)	24, 44, 49, 58, 88, 241
SchI	GAGTC	2 cut(s)	92, 165
SetI	ASST	2 cut(s)	203, 273
SmiMI	CAYNNNNRTG	2 cut(s)	230, 263
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	53, 287
TasI	AATT	2 cut(s)	53, 287
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	3 cut(s)	113, 142, 192
TspDTI	ATGAA	2 cut(s)	275, 281
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.