Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

49335407 .. 49336022

Gene Structure 616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACCTCGACAACCCTATCAACGTCGCCGTCTGCGCGGAGCACGCCTACCCTGCTACCGTCGCCAGATTCTCTCCCAACGGCAAGTGGATCACGTCCGCCGACGTCTCTGGCACAGTCAGGATCTGGGGGACCCACAACGATTTCATCCTCAAGAACGAGTTCAAGTTCGTCTCGGGTCGGATCGACAACCTCCAATGGTCCGCCGACGGAATGAGGATCATCGCTTGTGGCGAAGGCAAAGGGAGACCTTGCAGCTACGCGGTGATGGAGGCGGTGGATGCTTTCAGATACAATTATGTGAGATTAAGGAAAATCCACAATTTAAATCAAAAACTCACGTTTATGAAATTCCTTGGAAAGCTCAACATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

9.47

Isoelectric Point (pI)

20.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	14 - 78	1.8e-07	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	15 - 77	1e-05	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccII	CGCG	2 cut(s)	38, 263
AciI	CCGC	5 cut(s)	38, 99, 204, 263, 275
AclWI	GGATC	4 cut(s)	98, 131, 191, 227
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	258, 364
AluI	AGCT	2 cut(s)	258, 364
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	112, 178, 241
AlwI	GGATC	4 cut(s)	98, 131, 191, 227
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	132, 201
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	132, 201
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	2 cut(s)	14, 97
BcoDI	GTCTC	3 cut(s)	112, 178, 241
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	132, 201
BmeT110I	CYCGRG	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	132, 201
BmiI	GGNNCC	2 cut(s)	133, 134
BmsI	GCATC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	147, 286
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	2 cut(s)	38, 263
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	112, 178, 241
BsmBI	CGTCTC	2 cut(s)	112, 178
BsmFI	GGGAC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	90, 123, 183, 219
BspACI	CCGC	5 cut(s)	38, 99, 204, 263, 275
BspFNI	CGCG	2 cut(s)	38, 263
BspLI	GGNNCC	2 cut(s)	133, 134
BspPI	GGATC	4 cut(s)	98, 131, 191, 227
BspTNI	GGTCTC	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	4 cut(s)	90, 123, 183, 219
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	61, 118
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	147, 286
BstFNI	CGCG	2 cut(s)	38, 263
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	4 cut(s)	93, 126, 186, 222
BstMAI	GTCTC	3 cut(s)	112, 178, 241
BstMBI	GATC	4 cut(s)	90, 123, 183, 219
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 53, 62, 281
BstUI	CGCG	2 cut(s)	38, 263
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	147, 286
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	132, 201
CviJI	RGCY	2 cut(s)	258, 364
CviKI_1	RGCY	2 cut(s)	258, 364
DpnI	GATC	4 cut(s)	92, 125, 185, 221
DpnII	GATC	4 cut(s)	90, 123, 183, 219
DraI	TTTAAA	1 cut(s)	327
EciI	GGCGGA	2 cut(s)	88, 193
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	132, 201
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	2 cut(s)	112, 178
FaiI	YATR	2 cut(s)	300, 347
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	134, 293
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	183, 290
Hpy188III	TCNNGA	2 cut(s)	121, 154
Hpy99I	CGWCG	4 cut(s)	29, 65, 107, 212
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	61, 118
HpyCH4IV	ACGT	4 cut(s)	24, 95, 105, 341
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 53, 62, 281
HpySE526I	ACGT	4 cut(s)	24, 95, 105, 341
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	36
KflI	GGGWCCC	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	90, 123, 183, 219
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	66, 79, 96, 106, 112
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	4 cut(s)	24, 95, 105, 341
MalI	GATC	4 cut(s)	92, 125, 185, 221
MboI	GATC	4 cut(s)	90, 123, 183, 219
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	3 cut(s)	295, 322, 350
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	17, 161, 203, 210, 265
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	3 cut(s)	308, 326, 376
MslI	CAYNNNNRTG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	38, 263
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 53, 62, 281
NdeII	GATC	4 cut(s)	90, 123, 183, 219
NlaIV	GGNNCC	2 cut(s)	133, 134
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	133, 134
PspPI	GGNCC	2 cut(s)	132, 201
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	308, 326, 376
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	4 cut(s)	90, 123, 183, 219
Sau96I	GGNCC	2 cut(s)	132, 201
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	9 cut(s)	9, 27, 98, 108, 195, 253, 260, 344, 366
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	2 cut(s)	132, 201
SmiI	ATTTAAAT	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	295, 322, 350
SsiI	CCGC	5 cut(s)	38, 99, 204, 263, 275
StyI	CCWWGG	1 cut(s)	355
SwaI	ATTTAAAT	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	61, 118
TaiI	ACGT	4 cut(s)	27, 98, 108, 344
TaqI	TCGA	2 cut(s)	9, 186
TasI	AATT	3 cut(s)	295, 322, 350
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	3 cut(s)	308, 326, 376
Tru9I	TTAA	3 cut(s)	308, 326, 376
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	17, 136, 362
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	132, 201
XapI	RAATTY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.